Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17i01
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   0.77 
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   7.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   9.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 134 SIYHCDRSFSNISNTIHSISFLNA 205
           S++    +FSNI++ IH ISF NA
Sbjct: 800 SLFRWSATFSNIADGIHRISFNNA 823


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 26  IVHRLSVAIRFKN*L*DKYYQGENKNP*IHVDIYDLSIYHCDRSFSNISNTIHSISFLNA 205
           +V  ++  IR    L  KYY+ +N      + + +     CDR  S I NT+  +  ++ 
Sbjct: 243 LVEHVASIIRAHTPLVQKYYKAKNT-----ITVIEKLQGDCDRQGSIIVNTMFDVRRIDN 297

Query: 206 FFSSVS 223
             SS++
Sbjct: 298 LVSSIA 303


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 72   YSQFLNLIATDNLCTIF 22
            Y++FLN   T N C IF
Sbjct: 2502 YAEFLNFSLTKNRCVIF 2518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,753
Number of Sequences: 5004
Number of extensions: 29168
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)