Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h24
         (377 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ118293-1|AAZ99029.1| 2391|Homo sapiens filaggrin 2 protein.          29   5.0  
AY827490-1|AAX12417.1| 2391|Homo sapiens ifapsoriasin protein.         29   5.0  
AL356504-2|CAC13173.2| 2391|Homo sapiens filaggrin 2 protein.          29   5.0  
X83107-1|CAA58169.1|  675|Homo sapiens bmx protein.                    28   8.8  
BC016652-1|AAH16652.1|  675|Homo sapiens BMX non-receptor tyrosi...    28   8.8  
AF045459-1|AAC08966.1|  697|Homo sapiens Etk/Bmx cytosolic tyros...    28   8.8  

>DQ118293-1|AAZ99029.1| 2391|Homo sapiens filaggrin 2 protein.
          Length = 2391

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 120  QHSNSSHQANCPRGNRIATVVSAGHNTSSSKNFSSG 227
            +H++S H  +  RG+R A    +GH+ SS     SG
Sbjct: 2081 RHAHSGHGQSTQRGSRTAGRRGSGHSESSDSEVHSG 2116


>AY827490-1|AAX12417.1| 2391|Homo sapiens ifapsoriasin protein.
          Length = 2391

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 120  QHSNSSHQANCPRGNRIATVVSAGHNTSSSKNFSSG 227
            +H++S H  +  RG+R A    +GH+ SS     SG
Sbjct: 2081 RHAHSGHGQSTQRGSRTAGRRGSGHSESSDSEVHSG 2116


>AL356504-2|CAC13173.2| 2391|Homo sapiens filaggrin 2 protein.
          Length = 2391

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 120  QHSNSSHQANCPRGNRIATVVSAGHNTSSSKNFSSG 227
            +H++S H  +  RG+R A    +GH+ SS     SG
Sbjct: 2081 RHAHSGHGQSTQRGSRTAGRRGSGHSESSDSEVHSG 2116


>X83107-1|CAA58169.1|  675|Homo sapiens bmx protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 324 KKKNQ*NGTEEICFVLLRCDFSYFEYTYTRGRSQK 220
           KKK   N  +E  FVL + + SY+EY   +  S+K
Sbjct: 18  KKKMSPNNYKERLFVLTKTNLSYYEYDKMKRGSRK 52


>BC016652-1|AAH16652.1|  675|Homo sapiens BMX non-receptor tyrosine
           kinase protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 324 KKKNQ*NGTEEICFVLLRCDFSYFEYTYTRGRSQK 220
           KKK   N  +E  FVL + + SY+EY   +  S+K
Sbjct: 18  KKKMSPNNYKERLFVLTKTNLSYYEYDKMKRGSRK 52


>AF045459-1|AAC08966.1|  697|Homo sapiens Etk/Bmx cytosolic tyrosine
           kinase protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 324 KKKNQ*NGTEEICFVLLRCDFSYFEYTYTRGRSQK 220
           KKK   N  +E  FVL + + SY+EY   +  S+K
Sbjct: 41  KKKMSPNNYKERLFVLTKTNLSYYEYDKMKRGSRK 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,139,744
Number of Sequences: 237096
Number of extensions: 855967
Number of successful extensions: 1655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)