Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h23
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   5.5  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    26   5.5  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   9.7  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 373 CSQMDVRDMYHNY*LVCLHYHPSL-YSD 453
           C  MDVR+ YH Y +  LH+  +L Y D
Sbjct: 855 CQIMDVRNDYHLYIMTWLHHSWTLPYRD 882


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/75 (22%), Positives = 36/75 (48%)
 Frame = -2

Query: 379 ENKL*TVHQRNRLRRSSNRIHNKSTHYLSSRQYLNK*SKIEEFFLYPKLNL*IYNGINNK 200
           EN L  V ++ +  R   +I +    + ++   LN+    E  F    LN+ + + I   
Sbjct: 73  ENSLKRVLRQQQKERREGKIKSLQCLFCNNEGLLNRQEWFEHSFHVHGLNIGLADNIVYI 132

Query: 199 DEYVERKENSLKSYK 155
           +  +E+ +N L+S++
Sbjct: 133 NRLLEKIKNELESFR 147


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -2

Query: 532 GHTRKPPVKQYSDILT*YPNETDIVFDQNTVMDDNVNIPINSYGTYPGRPSENKL*TVHQ 353
           GH+R   +    + +   P   +   ++  ++++N N              EN + ++HQ
Sbjct: 106 GHSRLAQILSEENQIKRLPQSDNTTTER--IIENNPNYSNKPSKLKRALSGENSVFSIHQ 163

Query: 352 RNRLRRSSN 326
           RN L  SSN
Sbjct: 164 RNTLSPSSN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,349
Number of Sequences: 5004
Number of extensions: 52299
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)