Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h18
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 399 LSPTGKPELPLQLKQNMLSIE*EKKIY*LVVTGPTVTY*SLSPPWCL 259
           LSP        +  ++ +S++ +     +V    T TY +L P WCL
Sbjct: 443 LSPQSDSSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTLLPQWCL 489



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 577 GNPVSCAIANAVLDVIEEENLLERAS 500
           G P S A A           LLERAS
Sbjct: 900 GEPTSAAFAQGFATAASSPGLLERAS 925


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 404 DAYKQTPTADIADESMFMLQIFTPT 478
           D YK TP   +A E MF+ +    T
Sbjct: 137 DKYKPTPLGAVATEKMFVARHLAET 161


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 613 SDTGVEYFNTYGGNPVSCAIANAVLD 536
           ++TGV+YF     N ++C   N  L+
Sbjct: 306 TNTGVDYFTQINRNGIACWDTNTELN 331


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 655 VAAVITTPEIAKSFSDTGVEYFNTYGGNPVSC 560
           V  +  T  IAK  S  GV +F     + + C
Sbjct: 299 VQDIFNTESIAKIMSKNGVLFFGLMNNSAIGC 330


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 661 HPVAAVITTPEIAKSFSDTGVEYF 590
           H    V   P I KSF +  VEYF
Sbjct: 129 HTGKVVWKPPAIYKSFCEIDVEYF 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,653
Number of Sequences: 438
Number of extensions: 6213
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)