Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h13
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    40   3e-04
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    32   0.085
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    31   0.26 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    29   0.79 
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    27   3.2  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.2  
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    27   3.2  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   3.2  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   5.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   5.6  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    26   7.4  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    26   7.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   7.4  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   9.8  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   9.8  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = -3

Query: 262 VDLSLEGPAAKVSRKQATIRLRNSGEFFMSSE-GKRPIFVDGRPVLQGNKVKLNHNSVIE 86
           +D++  GP+  VSRK A +      + +  S  G+  I VDG+    G  VKL   S++E
Sbjct: 117 IDMNF-GPSKVVSRKHAVVEYDLDDQTWNCSVYGRNGIKVDGKLFKNGETVKLTSGSILE 175

Query: 85  IAALRFVFLV 56
           +A L+ +F++
Sbjct: 176 VAGLQMMFVL 185


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 517 DNELPDYKEDGVDLEMQMADRIEKKNIRLLENSLSRWQVLVQSVAGGNVELDKNT 353
           + EL +YK     +++ +    + + ++LLEN L     L +++   +VE DKNT
Sbjct: 2   EKELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNT 56


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -3

Query: 661 PTRTSKTLMAHWQLLKQYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGV 482
           P   S  L  H+Q+ K Y   P +T+ P   +++ K+L      E +N + L + K++G 
Sbjct: 23  PDNNSSFLSNHFQVRKSYSQAPARTLKPF-ASEDIKILLL----ENVNQSALSNLKDEGY 77

Query: 481 DLE 473
            +E
Sbjct: 78  QVE 80


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = -3

Query: 457 RIEKKNIRLLENSLSRWQVLVQSVAGGNVEL--DKNTLAVLRGRLVRYLMRS-REIAVGR 287
           R + KN+ ++ +S SRW   ++ ++G   E+  D    A L  +L  +  R+ R   +G 
Sbjct: 346 RDQGKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCLGS 405

Query: 286 STRDHPIDVDLSLEGPAAKVS 224
             R+  + +  ++  P    S
Sbjct: 406 PDREGTVSIVGAVSPPGGDFS 426


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 616 KQYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKKNI 437
           K+ QL      + + K++ D  LT SDAE+  N   +   ++DG+  E    D I++  +
Sbjct: 286 KEAQLSKLMKDMHVSKDKEDVGLTVSDAEDEYNGELVDPDEDDGLTAE-DREDMIKQYRV 344

Query: 436 RL 431
            L
Sbjct: 345 AL 346


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 772 ALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVF 665
           +LY  +++ LL   S     TLEK++++  QNP+ F
Sbjct: 277 SLYCDTQDILLNVNSQNLTSTLEKYKKMHLQNPNNF 312


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 589 TVLPLPKNQNDKVLTFSDAEETMNDNELPDYKED 488
           + L + K  + K+L F D  ET   ++LP Y +D
Sbjct: 24  STLAISKVISSKILQFEDNSETSLRHDLPKYDQD 57


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 598 PDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKK 443
           P Q  LP+ K QNDK    SD E + N+ E    K+   + ++   +  +K+
Sbjct: 275 PSQERLPVEKEQNDK----SDEEGSNNEQEEKQDKKQSTNRDLCRKESCKKE 322


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 177 CPLKENALYLLTDVPF 130
           CP K N  Y+L DVP+
Sbjct: 465 CPFKSNIFYVLKDVPW 480


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 550 LTFSDAEETMNDNELPD--YKEDGVDLEM-QMADRIEKKNIRLL 428
           LT S    TM +NELPD  +K + V +++  +  +I K   RLL
Sbjct: 535 LTLSSFSNTMFENELPDSFFKVEDVKVDIHHIKLKIRKSRHRLL 578


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 121 NKVKLNHNSVIEIAALRFVFLVNQDLISAIRPRSPLK 11
           N + L+ NS+     +   F++  +L+ A+  R P+K
Sbjct: 6   NPILLSQNSIRFATRVAIFFIIRDELVEAVTWRHPVK 42


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 565 QNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKKNIRLLEN 422
           ++D+   F + +ET  D    D   D     +Q  +R+E+ + RLLE+
Sbjct: 87  KSDRKALFGNRDETSGDYIASDQDYDQRTRLLQGTNRLEQSSQRLLES 134


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 460  DRIEKKNIRLLENSLSRWQVLVQSVAGGNVELDKNTLAVLR 338
            D   + N  LL++  S+W+ L++S     ++L+ N   +LR
Sbjct: 1202 DAFSEFNFSLLKDITSKWKDLLESFECRRLKLENNKDEILR 1242


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +1

Query: 364 QVQHYHQPPTVPTLATET-MN-FPVDVYFSS 450
           + QH H P T P   T T MN  P+  Y SS
Sbjct: 286 ETQHNHMPKTTPLRGTSTVMNGSPIGPYSSS 316


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 529 ETMNDNELPDYKEDGVDLEMQMADRIEKKNIRLLENSLSRW 407
           E +N    PD  E+G DL  ++  +  ++ I L+E  L  W
Sbjct: 368 ERLNIPSTPDIGEEGRDLLKRLLCKDPEQRITLVEVKLHPW 408


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 29/85 (34%), Positives = 41/85 (48%)
 Frame = -3

Query: 757 SEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLKQYQLLPDQTVLP 578
           +EEE+L T      PTL   +EL  Q   V  PTRT K   ++   L+Q   + D  VL 
Sbjct: 138 NEEEVL-TEQKQLDPTLAAKKELDLQMDAVLKPTRTKK--RSNEDNLEQ---MADDEVLR 191

Query: 577 LPKNQNDKVLTFSDAEETMNDNELP 503
           L   +  ++    DAE  +N  +LP
Sbjct: 192 L--REQMRLAALRDAE--LNSEQLP 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,166
Number of Sequences: 5004
Number of extensions: 70880
Number of successful extensions: 252
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)