Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17h13
(819 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011794-1|AAH11794.1| 462|Homo sapiens microspherule protein 1... 325 1e-88
AY336730-1|AAQ84517.1| 475|Homo sapiens MCRS2 protein. 325 1e-88
AF068007-1|AAC68599.1| 534|Homo sapiens cell cycle-regulated fa... 325 1e-88
AF015308-1|AAC52086.1| 462|Homo sapiens nucleolar protein protein. 324 2e-88
DQ157848-1|ABA42890.1| 563|Homo sapiens schwannomin interacting... 35 0.31
DQ157847-1|ABA42889.1| 536|Homo sapiens schwannomin interacting... 34 0.54
EF542797-1|ABQ18300.1| 1494|Homo sapiens methyl-CpG binding doma... 33 0.94
BC150264-1|AAI50265.1| 1494|Homo sapiens methyl-CpG binding doma... 33 0.94
AB040894-1|BAA95985.1| 1498|Homo sapiens KIAA1461 protein protein. 33 0.94
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 32 2.9
BC050548-1|AAH50548.1| 1127|Homo sapiens KIF4A protein protein. 31 5.0
AL357752-3|CAI41487.1| 1232|Homo sapiens kinesin family member 4... 31 5.0
AL139398-5|CAI41024.1| 1232|Homo sapiens kinesin family member 4... 31 5.0
AK130467-1|BAC85360.1| 250|Homo sapiens protein ( Homo sapiens ... 31 5.0
AF071592-1|AAD05492.2| 1232|Homo sapiens kinesin superfamily mot... 31 5.0
AB208797-1|BAD92034.1| 1235|Homo sapiens Chromosome-associated k... 31 5.0
DQ120629-1|ABB92415.1| 1185|Homo sapiens KIF4B protein. 30 8.8
AJ271784-1|CAB75427.1| 1232|Homo sapiens chromokinesin protein. 30 8.8
>BC011794-1|AAH11794.1| 462|Homo sapiens microspherule protein 1
protein.
Length = 462
Score = 325 bits (799), Expect = 1e-88
Identities = 153/259 (59%), Positives = 209/259 (80%), Gaps = 1/259 (0%)
Frame = -3
Query: 802 PDLVAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQ 623
P+ +AA+Q +AL+S +EE+LL + STS PTLE FQ+LL ++P FY RT+K L AHWQ
Sbjct: 197 PEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQ 256
Query: 622 LLKQYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKK 443
L+KQY LL DQTV PLPK D+VL FSDAE+ ++D++L D +++ ++ E+ +ADR +K+
Sbjct: 257 LMKQYYLLEDQTVQPLPKG--DQVLNFSDAEDLIDDSKLKDMRDEVLEHELMVADRRQKR 314
Query: 442 NIRLLENSLSRWQVLVQSVAG-GNVELDKNTLAVLRGRLVRYLMRSREIAVGRSTRDHPI 266
IR LE L +WQVLV S+ G + + D TLAVLRGR+VRYLMRSREI +GR+T+D+ I
Sbjct: 315 EIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQI 374
Query: 265 DVDLSLEGPAAKVSRKQATIRLRNSGEFFMSSEGKRPIFVDGRPVLQGNKVKLNHNSVIE 86
DVDLSLEGPA K+SRKQ I+L+N+G+FF+++EG+RPI++DGRPVL G+K +L++NSV+E
Sbjct: 375 DVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVE 434
Query: 85 IAALRFVFLVNQDLISAIR 29
IA+LRFVFL+NQDLI+ IR
Sbjct: 435 IASLRFVFLINQDLIALIR 453
>AY336730-1|AAQ84517.1| 475|Homo sapiens MCRS2 protein.
Length = 475
Score = 325 bits (799), Expect = 1e-88
Identities = 153/259 (59%), Positives = 209/259 (80%), Gaps = 1/259 (0%)
Frame = -3
Query: 802 PDLVAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQ 623
P+ +AA+Q +AL+S +EE+LL + STS PTLE FQ+LL ++P FY RT+K L AHWQ
Sbjct: 210 PEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQ 269
Query: 622 LLKQYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKK 443
L+KQY LL DQTV PLPK D+VL FSDAE+ ++D++L D +++ ++ E+ +ADR +K+
Sbjct: 270 LMKQYYLLEDQTVQPLPKG--DQVLNFSDAEDLIDDSKLKDMRDEVLEHELMVADRRQKR 327
Query: 442 NIRLLENSLSRWQVLVQSVAG-GNVELDKNTLAVLRGRLVRYLMRSREIAVGRSTRDHPI 266
IR LE L +WQVLV S+ G + + D TLAVLRGR+VRYLMRSREI +GR+T+D+ I
Sbjct: 328 EIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQI 387
Query: 265 DVDLSLEGPAAKVSRKQATIRLRNSGEFFMSSEGKRPIFVDGRPVLQGNKVKLNHNSVIE 86
DVDLSLEGPA K+SRKQ I+L+N+G+FF+++EG+RPI++DGRPVL G+K +L++NSV+E
Sbjct: 388 DVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVE 447
Query: 85 IAALRFVFLVNQDLISAIR 29
IA+LRFVFL+NQDLI+ IR
Sbjct: 448 IASLRFVFLINQDLIALIR 466
>AF068007-1|AAC68599.1| 534|Homo sapiens cell cycle-regulated factor
p78 protein.
Length = 534
Score = 325 bits (799), Expect = 1e-88
Identities = 153/259 (59%), Positives = 209/259 (80%), Gaps = 1/259 (0%)
Frame = -3
Query: 802 PDLVAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQ 623
P+ +AA+Q +AL+S +EE+LL + STS PTLE FQ+LL ++P FY RT+K L AHWQ
Sbjct: 269 PEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQ 328
Query: 622 LLKQYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKK 443
L+KQY LL DQTV PLPK D+VL FSDAE+ ++D++L D +++ ++ E+ +ADR +K+
Sbjct: 329 LMKQYYLLEDQTVQPLPKG--DQVLNFSDAEDLIDDSKLKDMRDEVLEHELMVADRRQKR 386
Query: 442 NIRLLENSLSRWQVLVQSVAG-GNVELDKNTLAVLRGRLVRYLMRSREIAVGRSTRDHPI 266
IR LE L +WQVLV S+ G + + D TLAVLRGR+VRYLMRSREI +GR+T+D+ I
Sbjct: 387 EIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQI 446
Query: 265 DVDLSLEGPAAKVSRKQATIRLRNSGEFFMSSEGKRPIFVDGRPVLQGNKVKLNHNSVIE 86
DVDLSLEGPA K+SRKQ I+L+N+G+FF+++EG+RPI++DGRPVL G+K +L++NSV+E
Sbjct: 447 DVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVE 506
Query: 85 IAALRFVFLVNQDLISAIR 29
IA+LRFVFL+NQDLI+ IR
Sbjct: 507 IASLRFVFLINQDLIALIR 525
>AF015308-1|AAC52086.1| 462|Homo sapiens nucleolar protein protein.
Length = 462
Score = 324 bits (797), Expect = 2e-88
Identities = 153/259 (59%), Positives = 209/259 (80%), Gaps = 1/259 (0%)
Frame = -3
Query: 802 PDLVAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQ 623
P+ +AA+Q +AL+S +EE+LL + STS PTLE FQ+LL ++P FY RT+K L AHWQ
Sbjct: 197 PEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLGRTAKALQAHWQ 256
Query: 622 LLKQYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKK 443
L+KQY LL DQTV PLPK D+VL FSDAE+ ++D++L D +++ ++ E+ +ADR +K+
Sbjct: 257 LMKQYYLLEDQTVQPLPKG--DQVLNFSDAEDLIDDSKLKDMRDEVLEHELMVADRRQKR 314
Query: 442 NIRLLENSLSRWQVLVQSVAG-GNVELDKNTLAVLRGRLVRYLMRSREIAVGRSTRDHPI 266
IR LE L +WQVLV S+ G + + D TLAVLRGR+VRYLMRSREI +GR+T+D+ I
Sbjct: 315 EIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQI 374
Query: 265 DVDLSLEGPAAKVSRKQATIRLRNSGEFFMSSEGKRPIFVDGRPVLQGNKVKLNHNSVIE 86
DVDLSLEGPA K+SRKQ I+L+N+G+FF+++EG+RPI++DGRPVL G+K +L++NSV+E
Sbjct: 375 DVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVE 434
Query: 85 IAALRFVFLVNQDLISAIR 29
IA+LRFVFL+NQDLI+ IR
Sbjct: 435 IASLRFVFLINQDLIALIR 453
>DQ157848-1|ABA42890.1| 563|Homo sapiens schwannomin interacting
protein 1 variant 1 protein.
Length = 563
Score = 35.1 bits (77), Expect = 0.31
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = -3
Query: 739 GTLSSTSHPTLEKFQELLDQNPHVFYPTRTS-KTLMAHWQLLKQYQLLPDQTVLPLPKNQ 563
G S +H + +++ P P + K + W+ Q Q P P P +
Sbjct: 19 GKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREYLQRQE-PLGKRSPSPPSV 77
Query: 562 NDKVLTFSDAEETMNDNELPDYKEDGVDL 476
+ + L+ S + T +D+ PDY+EDG+DL
Sbjct: 78 SSEKLSSSVSMNTFSDSSTPDYREDGMDL 106
>DQ157847-1|ABA42889.1| 536|Homo sapiens schwannomin interacting
protein 1 variant 2 protein.
Length = 536
Score = 34.3 bits (75), Expect = 0.54
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 580 PLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDL 476
P P + + + L+ S + T +D+ PDY+EDG+DL
Sbjct: 45 PSPPSVSSEKLSSSVSMNTFSDSSTPDYREDGMDL 79
>EF542797-1|ABQ18300.1| 1494|Homo sapiens methyl-CpG binding domain
protein 5 protein.
Length = 1494
Score = 33.5 bits (73), Expect = 0.94
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = -3
Query: 763 STSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLKQYQLLPDQTV 584
S E ++ ++ S+ L Q LL+ N +F P + + L+ +Q L+ +Q Q+
Sbjct: 945 SAGEGDMSSINNTLSNHQLTHLQSLLNNN-QMFPPNQQQQQLLQGYQNLQAFQ---GQST 1000
Query: 583 LPLPKNQNDKVLTFSDAEETMNDN 512
+P P N N F + + M ++
Sbjct: 1001 IPCPANNNPMACLFQNFQVRMQED 1024
>BC150264-1|AAI50265.1| 1494|Homo sapiens methyl-CpG binding domain
protein 5 protein.
Length = 1494
Score = 33.5 bits (73), Expect = 0.94
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = -3
Query: 763 STSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLKQYQLLPDQTV 584
S E ++ ++ S+ L Q LL+ N +F P + + L+ +Q L+ +Q Q+
Sbjct: 945 SAGEGDMSSINNTLSNHQLTHLQSLLNNN-QMFPPNQQQQQLLQGYQNLQAFQ---GQST 1000
Query: 583 LPLPKNQNDKVLTFSDAEETMNDN 512
+P P N N F + + M ++
Sbjct: 1001 IPCPANNNPMACLFQNFQVIMQED 1024
>AB040894-1|BAA95985.1| 1498|Homo sapiens KIAA1461 protein protein.
Length = 1498
Score = 33.5 bits (73), Expect = 0.94
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = -3
Query: 763 STSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLKQYQLLPDQTV 584
S E ++ ++ S+ L Q LL+ N +F P + + L+ +Q L+ +Q Q+
Sbjct: 949 SAGEGDMSSINNTLSNHQLTHLQSLLNNN-QMFPPNQQQQQLLQGYQNLQAFQ---GQST 1004
Query: 583 LPLPKNQNDKVLTFSDAEETMNDN 512
+P P N N F + + M ++
Sbjct: 1005 IPCPANNNPMACLFQNFQVIMQED 1028
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 31.9 bits (69), Expect = 2.9
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Frame = -3
Query: 814 EIFIPDLVAAVQQQALYSTSEEELLGTLS-----STSHPTLEKFQELLDQ-NPHVFYPTR 653
E + DL + QQ T E+ L S L+K + ++Q N + +
Sbjct: 534 ETMLRDLQEKINQQENSLTLEKLKLAVADLEKQRDCSQDLLKKREHHIEQLNDKLSKTEK 593
Query: 652 TSKTLMAHWQLLK-QYQLLPDQTVLPLPKNQNDKVLTFSDAEE 527
SK L++ +L K +Y+L ++T+ K++N+K+LT ++E+
Sbjct: 594 ESKALLSALELKKKEYELKEEKTLFSCWKSENEKLLTQMESEK 636
>BC050548-1|AAH50548.1| 1127|Homo sapiens KIF4A protein protein.
Length = 1127
Score = 31.1 bits (67), Expect = 5.0
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 793 VAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLK 614
+A Q + S E++LL TL LEK +E+ +QN + K + Q+
Sbjct: 943 MAEKQLEESVSEKEQQLLSTLKCQDEE-LEKMREVCEQNQQLLRENEIIKQKLTLLQVAS 1001
Query: 613 QYQLLPDQTVL 581
+ + LP T+L
Sbjct: 1002 RQKHLPKDTLL 1012
>AL357752-3|CAI41487.1| 1232|Homo sapiens kinesin family member 4A
protein.
Length = 1232
Score = 31.1 bits (67), Expect = 5.0
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 793 VAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLK 614
+A Q + S E++LL TL LEK +E+ +QN + K + Q+
Sbjct: 943 MAEKQLEESVSEKEQQLLSTLKCQDEE-LEKMREVCEQNQQLLRENEIIKQKLTLLQVAS 1001
Query: 613 QYQLLPDQTVL 581
+ + LP T+L
Sbjct: 1002 RQKHLPKDTLL 1012
>AL139398-5|CAI41024.1| 1232|Homo sapiens kinesin family member 4A
protein.
Length = 1232
Score = 31.1 bits (67), Expect = 5.0
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 793 VAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLK 614
+A Q + S E++LL TL LEK +E+ +QN + K + Q+
Sbjct: 943 MAEKQLEESVSEKEQQLLSTLKCQDEE-LEKMREVCEQNQQLLRENEIIKQKLTLLQVAS 1001
Query: 613 QYQLLPDQTVL 581
+ + LP T+L
Sbjct: 1002 RQKHLPKDTLL 1012
>AK130467-1|BAC85360.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ26957 fis, clone SLV00486. ).
Length = 250
Score = 31.1 bits (67), Expect = 5.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 241 DLPNLSRRQWG--DLVCYGQR-QSLWTSLNIELDDHGELPVCSCQVQHY 378
+L +L R +W +C Q + +WT LN ++ H ELP C+ +Q +
Sbjct: 160 NLHSLYRARWTIEHTICNSQTLEDIWTKLN-QIIRHNELPSCNATIQRH 207
>AF071592-1|AAD05492.2| 1232|Homo sapiens kinesin superfamily motor
KIF4 protein.
Length = 1232
Score = 31.1 bits (67), Expect = 5.0
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 793 VAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLK 614
+A Q + S E++LL TL LEK +E+ +QN + K + Q+
Sbjct: 943 MAEKQLEESVSEKEQQLLSTLKCQDEE-LEKMREVCEQNQQLLRENEIIKQKLTLLQVAS 1001
Query: 613 QYQLLPDQTVL 581
+ + LP T+L
Sbjct: 1002 RQKHLPKDTLL 1012
>AB208797-1|BAD92034.1| 1235|Homo sapiens Chromosome-associated
kinesin KIF4A variant protein.
Length = 1235
Score = 31.1 bits (67), Expect = 5.0
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 793 VAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLK 614
+A Q + S E++LL TL LEK +E+ +QN + K + Q+
Sbjct: 946 MAEKQLEESVSEKEQQLLSTLKCQDEE-LEKMREVCEQNQQLLRENEIIKQKLTLLQVAS 1004
Query: 613 QYQLLPDQTVL 581
+ + LP T+L
Sbjct: 1005 RQKHLPKDTLL 1015
>DQ120629-1|ABB92415.1| 1185|Homo sapiens KIF4B protein.
Length = 1185
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -3
Query: 793 VAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLK 614
+A Q + S E++L+ TL LEK +E+ +QN + K + Q+
Sbjct: 943 MAEKQLEKSASEKEQQLVSTLQCQDEE-LEKMREVCEQNQQLLQENEIIKQKLILLQVAS 1001
Query: 613 QYQLLPDQTVL 581
+ + LP+ T+L
Sbjct: 1002 RQKHLPNDTLL 1012
>AJ271784-1|CAB75427.1| 1232|Homo sapiens chromokinesin protein.
Length = 1232
Score = 30.3 bits (65), Expect = 8.8
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = -3
Query: 793 VAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLK 614
+A Q + S E+ LL TL LEK +E+ +QN + K + Q+
Sbjct: 943 MAEKQLEESVSEKEQRLLSTLKCQDEE-LEKMREVCEQNQQLLRENEIIKQKLTLLQVAS 1001
Query: 613 QYQLLPDQTVL 581
+ + LP T+L
Sbjct: 1002 RQKHLPKDTLL 1012
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,251,156
Number of Sequences: 237096
Number of extensions: 2479402
Number of successful extensions: 5783
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5772
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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