Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h13
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.64 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   1.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.5  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   5.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 511 HYHSLSPQHQRMSTLCHSDF 570
           H H+ +P HQ  + L HS +
Sbjct: 434 HSHAATPHHQHSTPLAHSSY 453


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 251 FGRSRREGI*KTSNNPSP 198
           +GR +REGI  + +NP+P
Sbjct: 554 YGRCKREGIELSRSNPTP 571


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 658 SGRIHEGSDQVTLEISPK 711
           SG++H G D V+L  +PK
Sbjct: 6   SGKVHFGVDDVSLYGTPK 23


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 658 SGRIHEGSDQVTLEISPK 711
           SG++H G D V+L  +PK
Sbjct: 6   SGKVHFGVDDVSLYGTPK 23


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 658 SGRIHEGSDQVTLEISPK 711
           SG++H G D V+L  +PK
Sbjct: 6   SGKVHFGVDDVSLYGTPK 23


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 347 CQCVLVKFNITTSHRLYQ 400
           C+C+L  FNI   + +++
Sbjct: 63  CECILKNFNILDKNNVFK 80


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = +1

Query: 496 CSQEVHYHSLSPQHQRMSTLCHSDFLVKVAQFDLARADIVLKAASVPST 642
           CS ++H   L+  HQ    +   D  V  +  +     +V++A    +T
Sbjct: 154 CSPKLHVFDLNTSHQLKQVVMPHDIAVNASTGNGGLVSLVVQAMDPVNT 202


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 358 SCQVQHYHQPPTVPTLATETMNFPVDVYFS-SQFCQP 465
           S Q  HY QPPT+    +  +N    +Y S +QF  P
Sbjct: 360 SLQHLHYRQPPTLSESYSSYVN---SMYASGAQFATP 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,466
Number of Sequences: 438
Number of extensions: 5007
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)