Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h11
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    31   0.24 
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.3  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.0  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   4.0  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   5.3  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    26   7.0  

>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 244 LCINFVNSSRNISKLKLNYALLTVFMRKILVIPNDSAYIYIFLKIV 381
           LC+ FV   +N+S +KL  A   V +R  L+ P   A +Y +L+++
Sbjct: 322 LCLQFVGKFKNLSAVKLEDA--GVILRLSLMFPFVLAILYFYLQLL 365


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 459 H*ATFLQHNILFRKYFSTYGL-FALKVYNFQKYINICGIIWY 337
           H  +FL H+     Y++ +GL + L + + + YIN  G +WY
Sbjct: 222 HNDSFLHHS----NYYAGFGLSYYLYLSSMKAYINSSGCLWY 259


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -2

Query: 684  FDKGNNFDLCSAFTFADLAGGLPIFHI---NPNDQRTAQWLSKDLTLLHIYEREHIFG 520
            F+  N+F+  +  T +  +G +  F +   +PND    QWL K  T + I E+  +FG
Sbjct: 837  FEVNNSFNASNVNTNSSFSGPISEFLVELFSPNDDAKQQWLPKK-TYISILEQ--LFG 891


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = -2

Query: 693 TTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKR 514
           T +F  G    L   +    L G +PI   +P      + L+ D  ++H+Y +  +  K 
Sbjct: 208 TNIFSSGGGLTLSEKYKLPFL-GSVPI---DPKFGEMIENLTPDSNIVHLYSKTEMSKKF 263

Query: 513 NWLARSFISR 484
           +++   F+++
Sbjct: 264 SFITNEFLNQ 273


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +3

Query: 387 LMRKGHMSKSICEIEYYVGEMSLSGDNRS 473
           L++  ++ KS  E+ + +GE+S +GD+++
Sbjct: 339 LIKDEYLQKSKLELSFILGELSKNGDDKN 367


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -2

Query: 498 SFISRTLCDFGCHH*ATFLQHNILFRKYFSTYGLFALKVYNFQKYINICGIIWY 337
           S IS    +FG H    +   N+   K ++  GL  L       Y N   ++ Y
Sbjct: 47  SLISSAAYEFGLHKHGPYYNDNVDDLKRYTFMGLLTLPTSEHDVYFNATRVLVY 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,039
Number of Sequences: 5004
Number of extensions: 67444
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)