Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h11
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 511 LAGEVLHQQNTLRLRLSPLSDISPT*YSISQI 416
           L+  +LH+ +T  L + PL+++ P  Y  S I
Sbjct: 129 LSVAILHRPDTKDLPVPPLTEVFPDKYMDSGI 160


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 496 GPRQPVPLSEDVLSLVN 546
           GP+ P+ +  D  SL+N
Sbjct: 43  GPQSPLDMKPDTASLIN 59


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 496 GPRQPVPLSEDVLSLVN 546
           GP+ P+ +  D  SL+N
Sbjct: 43  GPQSPLDMKPDTASLIN 59


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 414 SICEIEYYVGEMS 452
           S+C+I  YV EMS
Sbjct: 112 SLCKIRAYVSEMS 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,447
Number of Sequences: 438
Number of extensions: 4375
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)