Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17h08
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 237 1e-63
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 227 1e-60
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 29 0.77
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.8
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 2.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.1
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 26 5.5
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.5
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 9.5
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.5
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 9.5
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 237 bits (581), Expect = 1e-63
Identities = 110/168 (65%), Positives = 139/168 (82%)
Frame = -1
Query: 804 EQKTEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 625
+++++G+ + ++ KEYR K+E+EL I D+L +L+KHLIP A++ ESKVFY KMKGDY
Sbjct: 71 KEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKGDY 130
Query: 624 YRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSP 445
YRYLAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNFSVFYYEILNSP
Sbjct: 131 YRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNSP 190
Query: 444 DKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 301
D+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 191 DRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 227 bits (555), Expect = 1e-60
Identities = 109/170 (64%), Positives = 134/170 (78%), Gaps = 2/170 (1%)
Frame = -1
Query: 804 EQKTE--GSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKG 631
EQK E G+ R+ + KEYR K+E EL +I +DVL +L+KHLIP A+ ESKVFY KMKG
Sbjct: 68 EQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKG 127
Query: 630 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 451
DYYRYLAE GE + S +AY+ A +I+ A++ PT P+RLGLALNFSVFYYEIL+
Sbjct: 128 DYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILD 187
Query: 450 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 301
SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 188 SPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 29.1 bits (62), Expect = 0.77
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = -1
Query: 804 EQKTEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 628
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 627 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 517
+R Y+ E+ + ++ E KA +D E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = -1
Query: 786 SERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 607
S + ++ + YR+ ++ E ++ L A++ E + + RY+
Sbjct: 994 SIKSHELHEAYRLVKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVA 1053
Query: 606 VATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 475
++ E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1054 LSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 148 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 276
L + SV+I +TFS V+R L +T + VCW C L+ A+
Sbjct: 43 LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 801 QKTEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPK 676
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 702 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 565
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 119 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 27
FA LPVP K C F F+ L +W+ D+
Sbjct: 31 FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -1
Query: 564 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 391
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 390 DTLNEDSYKDSTLIMQLLRDN 328
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 57 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 182
++T D +F + G++R RL+TF GFG PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 511 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 612
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 783 ERKQQMAKEYRVKVEKELREIXYDV--LGLLDKHLIPKASNPE 661
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,178
Number of Sequences: 5004
Number of extensions: 61825
Number of successful extensions: 207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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