Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17h08
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 237 7e-63
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 237 1e-62
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 236 1e-62
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 231 5e-61
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 230 1e-60
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 225 2e-59
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 136 1e-32
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 125 4e-29
12_01_0915 - 8908643-8908756,8909086-8909203,8909570-8909682,891... 33 0.35
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 3.3
02_02_0106 + 6814391-6817007,6817086-6817462 29 4.3
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 7.6
04_04_1588 - 34633057-34633824 28 7.6
06_03_1237 + 28602250-28604196 28 10.0
01_07_0228 - 42154400-42154498,42155120-42155196,42156341-421564... 28 10.0
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 237 bits (580), Expect = 7e-63
Identities = 115/168 (68%), Positives = 136/168 (80%), Gaps = 2/168 (1%)
Frame = -1
Query: 804 EQKTE--GSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKG 631
EQK E G+E + + KEYR K+E EL +I +L LLD HL+P ++ PESKVFYLKMKG
Sbjct: 292 EQKEESRGNEDRCTLIKEYRGKIETELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKG 351
Query: 630 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 451
DYYRYLAE TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILN
Sbjct: 352 DYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILN 411
Query: 450 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 307
SPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 412 SPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 237 bits (579), Expect = 1e-62
Identities = 119/179 (66%), Positives = 137/179 (76%), Gaps = 3/179 (1%)
Frame = -1
Query: 804 EQKTEG--SERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKG 631
EQK EG +E + KEYR K+E EL +I +L LLD HL+P ++ ESKVFYLKMKG
Sbjct: 68 EQKEEGRGNEEHVTLIKEYRGKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKG 127
Query: 630 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 451
DY+RYLAE TG R E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILN
Sbjct: 128 DYHRYLAEFKTGAERKEAAESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILN 187
Query: 450 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 277
SPDKAC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE E
Sbjct: 188 SPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 236 bits (578), Expect = 1e-62
Identities = 115/175 (65%), Positives = 138/175 (78%), Gaps = 2/175 (1%)
Frame = -1
Query: 804 EQKTE--GSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKG 631
EQK E G+E + + K+YR K+E EL +I +L LL+ HL+P ++ PESKVFYLKMKG
Sbjct: 74 EQKEESRGNEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKG 133
Query: 630 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 451
DYYRYLAE TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILN
Sbjct: 134 DYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILN 193
Query: 450 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
SPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 194 SPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 231 bits (565), Expect = 5e-61
Identities = 115/175 (65%), Positives = 133/175 (76%), Gaps = 2/175 (1%)
Frame = -1
Query: 804 EQKTE--GSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKG 631
EQK E G+E KEYR ++E EL +I +L LLD HL+P A+ ESKVFYLKMKG
Sbjct: 73 EQKEESRGNEAYVASIKEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKG 132
Query: 630 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 451
DY+RYLAE +G R E++ AY+ A +I+ A + THPIRLGLALNFSVFYYEILN
Sbjct: 133 DYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILN 192
Query: 450 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
SPD+AC LAKQAFDDAIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 193 SPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 230 bits (562), Expect = 1e-60
Identities = 112/175 (64%), Positives = 130/175 (74%), Gaps = 2/175 (1%)
Frame = -1
Query: 804 EQKTEGSERKQQMA--KEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKG 631
EQK EG A + YR K+E EL I +L LLD HL+P A ESKVFYLKMKG
Sbjct: 51 EQKEEGRGNDAHAATIRSYRGKIEAELARICDGILALLDSHLVPSAGAAESKVFYLKMKG 110
Query: 630 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 451
DY+RYLAE +G+ R E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILN
Sbjct: 111 DYHRYLAEFKSGDERKQAAESTMNAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILN 170
Query: 450 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
SPD+AC LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 171 SPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 225 bits (551), Expect = 2e-59
Identities = 111/175 (63%), Positives = 132/175 (75%), Gaps = 2/175 (1%)
Frame = -1
Query: 804 EQKTEG--SERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKG 631
EQK EG + A+ YR +VE EL I +L LLD+ L+P A+ ++KVFYLKMKG
Sbjct: 78 EQKEEGRGAAGHAAAARSYRARVEAELSNICAGILRLLDERLVPAAAAVDAKVFYLKMKG 137
Query: 630 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 451
DY+RYLAE TG R + + AYQ A +I+ ++ PTHPIRLGLALNFSVFYYEILN
Sbjct: 138 DYHRYLAEFKTGAERKDAADATLAAYQAAQDIAMKELSPTHPIRLGLALNFSVFYYEILN 197
Query: 450 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
SPD+AC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 198 SPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 136 bits (330), Expect = 1e-32
Identities = 80/194 (41%), Positives = 112/194 (57%), Gaps = 15/194 (7%)
Frame = -1
Query: 804 EQKTEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDK-----HLIPKASNPESKVFYLK 640
+++T+G E + EYR KVE E+ +I DV+ ++DK + + K+ +
Sbjct: 47 KEETKGKESHVRQTAEYRRKVEAEMDKICCDVINIIDKKGDYYRYLAEFKTGTEKIEVSE 106
Query: 639 MKGDYYR----------YLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGL 490
+ + Y +L T ++ + A + ++ + PT PIRLGL
Sbjct: 107 LSLNAYEACDPFFIFNLFLFSQVTCFIEFTIYQ--VLVVYTASKTAQTDLTPTDPIRLGL 164
Query: 489 ALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTS 310
ALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++YKDSTLIMQLLRDNL LW S
Sbjct: 165 ALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNS 224
Query: 309 DTQGDGDEPAEGGD 268
D D D+ E D
Sbjct: 225 DMADDADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 125 bits (302), Expect = 4e-29
Identities = 70/169 (41%), Positives = 103/169 (60%)
Frame = -1
Query: 804 EQKTEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 625
EQK ++ Y+ KVE ELR + +VL ++ H +P A++ E+ VF+ KMKGDY
Sbjct: 67 EQKVTAGDQPGVTINGYKKKVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDY 126
Query: 624 YRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSP 445
YRYLAE +TG + + + S AYQ A+ ++ FS+ EI+NSP
Sbjct: 127 YRYLAEFSTGTEKKAATDQSLMAYQ-AWPCAQL---------------FSLL--EIMNSP 168
Query: 444 DKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 298
++A Q+AKQA D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 169 ERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>12_01_0915 -
8908643-8908756,8909086-8909203,8909570-8909682,
8911138-8911218,8911307-8911357,8912173-8912232,
8913353-8913419,8913509-8913759
Length = 284
Score = 32.7 bits (71), Expect = 0.35
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Frame = -1
Query: 753 RVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVV 574
RVK + + EI L KH K +PES+ ++K+ Y E G+ +++
Sbjct: 63 RVKQDANVSEIKKAYYKLSLKHHPDKNPDPESRKLFVKIANAYEILKDESTRGQYDYAIA 122
Query: 573 EDSQKAYQDAFEISKAKMQPTHP--IRLGLALNFSVF-YYEILNSPDKACQLAKQ 418
+ Y A T P + +GL L S F Y KA + KQ
Sbjct: 123 HPEEVFYNTAQYYRAYYGHKTDPRAVLIGLLLIISAFQYLNQFGRYSKAIETVKQ 177
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -1
Query: 477 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 304
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 303 QGDGDEPAEGGDN*YLAA 250
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 217 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 59
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 735 ELREIXYDVLGLLDKHLIPKASNPES-----KVFYLKMKG 631
+LRE+ YD+ LD+ L+ A+ P S K+ K+KG
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKG 110
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 229 KCVCWGECGEILVVAALGRLVAIALSV*RPK 321
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>06_03_1237 + 28602250-28604196
Length = 648
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -1
Query: 705 GLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKA 526
GL+D + + SKVFY + + Y Y + +A G H ++ +++ +++A
Sbjct: 314 GLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIA-GLASHGRASEAIALFKEM--VNRA 370
Query: 525 KMQPTHPIRLGL 490
++P H +G+
Sbjct: 371 NVEPNHVTFIGV 382
>01_07_0228 -
42154400-42154498,42155120-42155196,42156341-42156425,
42156511-42156956,42157070-42157194,42157273-42157523
Length = 360
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -1
Query: 732 LREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAY 553
L + YD +G D +I + P+ + K KGDY LAEV H V++D K+
Sbjct: 160 LTKSFYDFIGSTDCTVIKLRNYPDD--WDEKKKGDYLLTLAEV-----NHGVLKDKLKSR 212
Query: 552 QD 547
D
Sbjct: 213 DD 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,875,719
Number of Sequences: 37544
Number of extensions: 398129
Number of successful extensions: 1143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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