Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h06
         (740 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2754|ABC66050.1|  119|Drosophila melanogaster CG33998-P...    56   5e-08
BT023029-1|AAY55445.1|  112|Drosophila melanogaster IP04046p pro...    46   5e-05
AE013599-1627|AAF58432.1|  112|Drosophila melanogaster CG13323-P...    46   5e-05
AE013599-1628|AAF58431.1|  112|Drosophila melanogaster CG13324-P...    44   2e-04
AE014298-1339|ABC67180.1|  117|Drosophila melanogaster CG34026-P...    41   0.002
AE014134-2946|AAN11008.1|  117|Drosophila melanogaster CG31789-P...    40   0.005
AY113466-1|AAM29471.1|  163|Drosophila melanogaster RE41194p pro...    35   0.10 
AE014298-2728|AAF48850.1|  163|Drosophila melanogaster CG15043-P...    35   0.10 
AE013599-3573|AAM68241.1|  122|Drosophila melanogaster CG30413-P...    32   0.71 
AY071266-1|AAL48888.1|  160|Drosophila melanogaster RE30049p pro...    31   1.2  
AE014298-2727|AAF48849.2|  160|Drosophila melanogaster CG15044-P...    31   1.2  

>AE013599-2754|ABC66050.1|  119|Drosophila melanogaster CG33998-PA
           protein.
          Length = 119

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = -2

Query: 739 TYRDIVLYK-INEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKDHYTDGNGGYPIVK 563
           TYRD+ L++ I   K  F  +V T E  + +  ++    I+ I + D   DGNGGY  + 
Sbjct: 33  TYRDMHLHREIITEKSKFLRVV-TREFVFDQ--KKLARTITQIVITDQIRDGNGGYAYLT 89

Query: 562 SGGVGQKFVKLKLKSQRGHGFNFTVTIYG 476
           +GG    + K+ LKSQR  GF+F + IYG
Sbjct: 90  AGGPQTTYAKIHLKSQRNQGFSFIIDIYG 118


>BT023029-1|AAY55445.1|  112|Drosophila melanogaster IP04046p
           protein.
          Length = 112

 Score = 46.0 bits (104), Expect = 5e-05
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = -2

Query: 634 FAYISAIYVKDHYTDGNGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVTIYGK 473
           F  ISA+ V D++ + +G  P + SGG G +F  + L+ Q   G N TV I+G+
Sbjct: 59  FYNISAVIVYDNFKNNSGASPSLYSGGPGYRFATVNLRGQVNRGINSTVEIWGR 112


>AE013599-1627|AAF58432.1|  112|Drosophila melanogaster CG13323-PA
           protein.
          Length = 112

 Score = 46.0 bits (104), Expect = 5e-05
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = -2

Query: 634 FAYISAIYVKDHYTDGNGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVTIYGK 473
           F  ISA+ V D++ + +G  P + SGG G +F  + L+ Q   G N TV I+G+
Sbjct: 59  FYNISAVIVYDNFKNNSGASPSLYSGGPGYRFATVNLRGQVNRGINSTVEIWGR 112


>AE013599-1628|AAF58431.1|  112|Drosophila melanogaster CG13324-PA
           protein.
          Length = 112

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -2

Query: 634 FAYISAIYVKDHYTDGNGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVTIYGK 473
           F  ISA+ V D++ + +G  P + SGG G +F  + L+ Q   G + TV I+G+
Sbjct: 59  FYNISAVIVYDNFKNNSGASPSLYSGGPGYRFATVNLRGQVNRGIDSTVEIWGR 112


>AE014298-1339|ABC67180.1|  117|Drosophila melanogaster CG34026-PA
           protein.
          Length = 117

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 26/86 (30%), Positives = 41/86 (47%)
 Frame = -2

Query: 730 DIVLYKINEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKDHYTDGNGGYPIVKSGGV 551
           D  L K    K  F  +V+T +  + +    N   I+AI + D     +G   ++ SGG 
Sbjct: 33  DYQLAKDTVSKAFFVGLVQTKKYVFKQSDNLNALTITAIKITDK-KKSHGATAVLVSGGP 91

Query: 550 GQKFVKLKLKSQRGHGFNFTVTIYGK 473
           G K   +K  S+RG+G    V I+G+
Sbjct: 92  GSKGATIKFTSERGYGIKDIVEIWGR 117


>AE014134-2946|AAN11008.1|  117|Drosophila melanogaster CG31789-PA
           protein.
          Length = 117

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -2

Query: 673 TSEIEYPEPGQQNFAYISAIYVKDHYTDGNGGYPIVKSGGVGQKFVKLKLKSQRGHGFNF 494
           +S I +P  GQ N   I  I + D +T+ +G Y  + SGG G    ++ + SQ   G N 
Sbjct: 50  SSLISFPLAGQSNTKTIRYISITDRFTNSSGPYSTLWSGGPGFINAQVNVTSQFSQGINV 109

Query: 493 TVTIY 479
           T   +
Sbjct: 110 TAQFW 114


>AY113466-1|AAM29471.1|  163|Drosophila melanogaster RE41194p
           protein.
          Length = 163

 Score = 35.1 bits (77), Expect = 0.10
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -2

Query: 697 YGFPFIVRTS-EIEYPEPGQ-QNFAYISAIYVKDHYTDGNGGYPIVKSGGVGQKFVKLKL 524
           Y FP     S ++ YPE G+    +Y+  +  +D     N G   V +GG+GQ  + + L
Sbjct: 90  YEFPRAQDVSLQLTYPENGKGATVSYVELLCTQDT----NEGTAYVVAGGIGQSLISIVL 145

Query: 523 KSQRGHGFNFTVTIYG 476
           +++    F++    YG
Sbjct: 146 EAKNTKNFSYQALYYG 161


>AE014298-2728|AAF48850.1|  163|Drosophila melanogaster CG15043-PA
           protein.
          Length = 163

 Score = 35.1 bits (77), Expect = 0.10
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -2

Query: 697 YGFPFIVRTS-EIEYPEPGQ-QNFAYISAIYVKDHYTDGNGGYPIVKSGGVGQKFVKLKL 524
           Y FP     S ++ YPE G+    +Y+  +  +D     N G   V +GG+GQ  + + L
Sbjct: 90  YEFPRAQDVSLQLTYPENGKGATVSYVELLCTQDT----NEGTAYVVAGGIGQSLISIVL 145

Query: 523 KSQRGHGFNFTVTIYG 476
           +++    F++    YG
Sbjct: 146 EAKNTKNFSYQALYYG 161


>AE013599-3573|AAM68241.1|  122|Drosophila melanogaster CG30413-PA
           protein.
          Length = 122

 Score = 32.3 bits (70), Expect = 0.71
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 568 VKSGGVGQKFVKLKLKSQRGHGFNFTVTIYG 476
           + SGGVG   V +K  S RG G    V IYG
Sbjct: 90  ITSGGVGSTTVTIKFTSARGAGIKSQVVIYG 120


>AY071266-1|AAL48888.1|  160|Drosophila melanogaster RE30049p
           protein.
          Length = 160

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -2

Query: 664 IEYPEPGQQNFAYISAIYVKDHYTDGNGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVT 485
           + YP          S     D   D  GGY  +  GG+GQ  V++ L S +   F +   
Sbjct: 99  MSYPAGASTGVTLTSIEVYVDMTADDAGGY--LTKGGIGQTNVEILLTSNQTRSFVYETF 156

Query: 484 IYG 476
           IYG
Sbjct: 157 IYG 159


>AE014298-2727|AAF48849.2|  160|Drosophila melanogaster CG15044-PA
           protein.
          Length = 160

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -2

Query: 664 IEYPEPGQQNFAYISAIYVKDHYTDGNGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVT 485
           + YP          S     D   D  GGY  +  GG+GQ  V++ L S +   F +   
Sbjct: 99  MSYPAGASTGVTLTSIEVYVDMTADDAGGY--LTKGGIGQTNVEILLTSNQTRSFVYETF 156

Query: 484 IYG 476
           IYG
Sbjct: 157 IYG 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,225,531
Number of Sequences: 53049
Number of extensions: 494979
Number of successful extensions: 919
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)