Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h04
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    28   0.087
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.20 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 0.087
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 727 KELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYKL 557
           +E E+++ ++IL G YD+ +R S E    G   +  N+    I      TMEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 727 KELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYKL 557
           +E E+++ ++IL G YD+ +R S E    G   +  N+    I   S   MEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 68  SYFTIVSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFV 187
           S  T+V  C     S  + T++ S+++ ++    QD+VF+
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFI 163


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 784 SPSAPASLKCPREA*AVLTKELEEKLYNSILT 689
           SP+ P   KC       + KE+E+  Y+ I T
Sbjct: 275 SPATPKGSKCSMITTPEIKKEVEDMEYDDIKT 306


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 628 WSPCLGSRIPSSDGQRCRSHR 690
           + P LG  +  S GQ+ R+HR
Sbjct: 118 FKPWLGDGLLISTGQKWRNHR 138


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 254 PCYIRHQHRRHHQ 216
           P Y  H H  HHQ
Sbjct: 68  PIYQSHHHLHHHQ 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 776 SAGVTEMSAGSMSSSNKRTRGETVQQHPHR 687
           S GV   +AG +  S    +    Q HPHR
Sbjct: 301 SPGVYPSTAGFLPPSYHPHQHHPSQYHPHR 330



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 239 HQHRRHHQGAVVPPAH 192
           HQH  H  G  + P H
Sbjct: 336 HQHGNHTMGPTMGPPH 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,621
Number of Sequences: 438
Number of extensions: 4934
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)