Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h03
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    31   0.26 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.2  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   5.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   5.6  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   7.4  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   9.7  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 284 EKIYECWNFLIKTFYHFLVVYNYNVIKLINHLID-INKILQFLFHDLKVYTFNPWKF 117
           ++ YE WN +++   HF ++ + N+I  +   ++ I + LQ  F      +F+PW F
Sbjct: 342 KEFYELWNSILQN--HF-IISSRNIIDSLGLYVNKIKEKLQICFEIPPTNSFDPWSF 395


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 129 SMEVFTFHTMCYFHVCMYVFWKFPVFSNFIFTCY*YYL 16
           S  +F    +  FH   + F  FP+ S  +F C+  +L
Sbjct: 167 SHSLFHISHLISFHFLFFSFLSFPLLSFILFPCFSLFL 204


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 112 IPYHVLFSCMYVCILEISSIQQFYIHLLL 26
           +P+H++F C  +CI E +      + LLL
Sbjct: 555 MPFHMVFECYKLCINEFTPFDLEVLALLL 583


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 297 HLTCFYYSKNVSEVCT*LNN*LFYT*LCNAY*FNHNKNRMDIDTMKI 437
           HL  F Y K++ + C+ LN+ L      +   F HN    DIDT+ +
Sbjct: 279 HLFAFRYDKSLGKFCSFLNHNLLSLCSPSGVLFGHN----DIDTIYV 321


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 239 HFLVVYNYN---VIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHSIPCAIFMYV 81
           + L+  NY+     K+ + L +    LQ L H   +Y F P  F  ++ CA+  +V
Sbjct: 148 NLLLAINYSPKTYTKIFDFLRNGRAPLQVLVHHCMLYNFYPEDFQDALWCAVQAHV 203


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 37  EYKIAEYWKFPKYIHTYMKIAHGMECKNF 123
           E KI E+W+     HT +K++ G     F
Sbjct: 9   EEKIVEFWREIDAFHTQLKLSQGRPTYTF 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,650
Number of Sequences: 5004
Number of extensions: 65281
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)