Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h03
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.8  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 91  KIAHGMECKNFHGLNVYTFKS*NKNCNILLMSIKWLINFI 210
           KI   +  K  H  N Y +   N N N     + + IN+I
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 91  KIAHGMECKNFHGLNVYTFKS*NKNCNILLMSIKWLINFI 210
           KI   +  K  H  N Y +   N N N     + + IN+I
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 91  KIAHGMECKNFHGLNVYTFKS*NKNCNILLMSIKWLINFI 210
           KI   +  K  H  N Y +   N N N     + + IN+I
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 628 ATSIFKCLLSPCTDIKFFYFNV 693
           A+S+F  LL P   + F YF +
Sbjct: 11  ASSVFLSLLIPALILYFIYFRI 32


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 760 TTFXIAAYKHGYQASMPPLSATR 692
           T   +A    G  AS+PP+S T+
Sbjct: 280 TLLTMATQTSGINASLPPVSYTK 302


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 760 TTFXIAAYKHGYQASMPPLSATR 692
           T   +A    G  AS+PP+S T+
Sbjct: 280 TLLTMATQTSGINASLPPVSYTK 302


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 139 IHLIHGSFYIPYHVLFSCMY 80
           I+   GSFYIP  V+    Y
Sbjct: 204 IYATLGSFYIPLFVMIQVYY 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,575
Number of Sequences: 438
Number of extensions: 4468
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)