Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h02
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    60   4e-10
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    44   2e-05
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    42   1e-04
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    40   6e-04
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    34   0.023
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.85 
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    28   1.5  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    28   2.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    28   2.0  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   3.4  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   3.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.5  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    27   4.5  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 26/41 (63%), Positives = 35/41 (85%)
 Frame = -3

Query: 860 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
           V+T+LGE+L+ EEV +MIREAD DGDG +NYEEF  +++SK
Sbjct: 110 VLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISSK 150



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = -3

Query: 860 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
           VM +LG+  T  E+ +MI E D DG+G +++ EF+TMM  K
Sbjct: 37  VMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARK 77



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -3

Query: 857 MTNLGEKLTDEEVDEMIREA----DIDGDGQVNYEEFVTMMTS 741
           +T +  K+ D + +E +REA    D DG+G +  EE   ++TS
Sbjct: 71  LTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTS 113


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/38 (50%), Positives = 30/38 (78%)
 Frame = -3

Query: 860 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 747
           V+T+LGEKL++EE+DE+++   +  DG VNY +FV M+
Sbjct: 102 VLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMI 138


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = -3

Query: 860 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 747
           V   L E + D+E++ MI E D+D DG++N +EF+ +M
Sbjct: 135 VAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -3

Query: 857 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
           M  LGEKL+D EV  M++EAD    G  +Y +FV  + +K
Sbjct: 104 MKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 860 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 759
           V TNL E    + VD+ I E D D DG++++EEF
Sbjct: 123 VGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEF 156


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 827 EEVDEMIREADIDGDGQVNYEEFV 756
           +EV E IRE ++D  G+V  E+FV
Sbjct: 54  DEVREAIREVNVDSSGRVEPEDFV 77


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 839 KLTDEEVDEMIREADIDGDGQVNYEEFVTMM 747
           KL+ ++++++   ADID DG  +++EF   M
Sbjct: 36  KLSSDKLEKIWDLADIDDDGMFDFDEFAIAM 66


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 827 EEVDEMIREADIDGDGQVNYEEFVTMMTS 741
           +E+ E     D DGDG +  E+  TM+TS
Sbjct: 48  QELKEAFALLDKDGDGNIGREDVKTMLTS 76


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 651 SNTMLILCVMKQNVYLNSLLFTHTLAGGSLRRHHGDE 761
           S T+L + +M QN +LN+  F H  A  + R+ + +E
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKADFAFRQKNYEE 235


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 106 ISIVGKNLILSKWKV---NPLCYYLTTFDSFCYKI 11
           +S + KN +L   K+    P+C+ +T + SF Y I
Sbjct: 348 LSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAI 382


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 860 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 762
           V  +  E+  +EE DEM  E D +G+G    EE
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 479 KGKTSGVRRNVMV*VSGSCRLLTYICVYVCVRASVRGARTFRCIHYIYL*ST 324
           +  + G+R ++     GS R+LT+    + +R +   A  F  IH+  L ST
Sbjct: 9   QSSSKGLRSSIFF--QGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQST 58


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 121 LSHLHKYNYNAVSINL 168
           +S+LH Y YNA++INL
Sbjct: 189 VSNLHGYTYNALNINL 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,940
Number of Sequences: 5004
Number of extensions: 55703
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)