Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17h01
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0582 + 9624481-9626844                                           28   2.9  
07_03_0751 - 21239549-21240559                                         27   3.8  

>03_02_0582 + 9624481-9626844
          Length = 787

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 55  PSL*KIYKFIKQSYHFQLYYITLFCFVNTYLSPDLVIXTLASQLVT 192
           PS   + KF+   +  ++  +T   F+NT  +P++ I  LA+ LVT
Sbjct: 467 PSSSSVSKFVNP-FWIEMGVLTRRAFINTKRTPEVFIIRLAAVLVT 511


>07_03_0751 - 21239549-21240559
          Length = 336

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 233 QALATIGYIIFLTHVTSWLARVXITRSGL 147
           +A+AT   + F+T   SWL    +TRSGL
Sbjct: 277 RAVATAMTLAFVTGTGSWLFFAPVTRSGL 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,669,938
Number of Sequences: 37544
Number of extensions: 62799
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)