Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17h01
(380 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY028899-1|AAK30024.1| 1624|Homo sapiens ATP-binding cassette A9... 30 2.2
AF423346-1|AAN32752.1| 1624|Homo sapiens ATP-binding cassette su... 30 2.2
AF423307-1|AAN32751.1| 1624|Homo sapiens ATP-binding cassette su... 30 2.2
BC151235-1|AAI51236.1| 718|Homo sapiens ATP-binding cassette, s... 29 3.8
BC141836-1|AAI41837.1| 693|Homo sapiens ABCB8 protein protein. 29 3.8
BC141814-1|AAI41815.1| 718|Homo sapiens ATP-binding cassette, s... 29 3.8
AK222911-1|BAD96631.1| 718|Homo sapiens ATP-binding cassette, s... 29 3.8
AK128129-1|BAC87287.1| 467|Homo sapiens . protein. 29 3.8
AK094636-1|BAC04392.1| 701|Homo sapiens protein ( Homo sapiens ... 29 3.8
AK002018-1|BAA92038.1| 735|Homo sapiens protein ( Homo sapiens ... 29 3.8
AF047690-1|AAD15748.1| 718|Homo sapiens ATP-binding cassette pr... 29 3.8
>AY028899-1|AAK30024.1| 1624|Homo sapiens ATP-binding cassette A9
protein.
Length = 1624
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -1
Query: 284 VFSPKXLXXXVATVFGVQALATIGYI---IFLTHVTSWLARVXITRSGL 147
+FSP+ + + + +Q L +IGY+ +FLT+V S++ R SG+
Sbjct: 1091 IFSPEEIIFIIQNLL-IQILCSIGYVSSLVFLTYVISFIFRNGRKNSGI 1138
>AF423346-1|AAN32752.1| 1624|Homo sapiens ATP-binding cassette
sub-family A member 9 protein.
Length = 1624
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -1
Query: 284 VFSPKXLXXXVATVFGVQALATIGYI---IFLTHVTSWLARVXITRSGL 147
+FSP+ + + + +Q L +IGY+ +FLT+V S++ R SG+
Sbjct: 1091 IFSPEEIIFIIQNLL-IQILCSIGYVSSLVFLTYVISFIFRNGRKNSGI 1138
>AF423307-1|AAN32751.1| 1624|Homo sapiens ATP-binding cassette
sub-family A member 9 protein.
Length = 1624
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -1
Query: 284 VFSPKXLXXXVATVFGVQALATIGYI---IFLTHVTSWLARVXITRSGL 147
+FSP+ + + + +Q L +IGY+ +FLT+V S++ R SG+
Sbjct: 1091 IFSPEEIIFIIQNLL-IQILCSIGYVSSLVFLTYVISFIFRNGRKNSGI 1138
>BC151235-1|AAI51236.1| 718|Homo sapiens ATP-binding cassette,
sub-family B (MDR/TAP), member 8 protein.
Length = 718
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 245 VFGVQALATIGYIIFLTHVTSWLA 174
++GVQ L T GY++ L+HV +A
Sbjct: 184 LYGVQGLLTFGYLVLLSHVGERMA 207
>BC141836-1|AAI41837.1| 693|Homo sapiens ABCB8 protein protein.
Length = 693
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 245 VFGVQALATIGYIIFLTHVTSWLA 174
++GVQ L T GY++ L+HV +A
Sbjct: 184 LYGVQGLLTFGYLVLLSHVGERMA 207
>BC141814-1|AAI41815.1| 718|Homo sapiens ATP-binding cassette,
sub-family B (MDR/TAP), member 8 protein.
Length = 718
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 245 VFGVQALATIGYIIFLTHVTSWLA 174
++GVQ L T GY++ L+HV +A
Sbjct: 184 LYGVQGLLTFGYLVLLSHVGERMA 207
>AK222911-1|BAD96631.1| 718|Homo sapiens ATP-binding cassette,
sub-family B, member 8 variant protein.
Length = 718
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 245 VFGVQALATIGYIIFLTHVTSWLA 174
++GVQ L T GY++ L+HV +A
Sbjct: 184 LYGVQGLLTFGYLVLLSHVGERMA 207
>AK128129-1|BAC87287.1| 467|Homo sapiens . protein.
Length = 467
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 245 VFGVQALATIGYIIFLTHVTSWLA 174
++GVQ L T GY++ L+HV +A
Sbjct: 221 LYGVQGLLTFGYLVLLSHVGERMA 244
>AK094636-1|BAC04392.1| 701|Homo sapiens protein ( Homo sapiens
cDNA FLJ37317 fis, clone BRAMY2017455, highly similar to
Homo sapiens ATP-binding cassette protein M-ABC1 mRNA.
).
Length = 701
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 245 VFGVQALATIGYIIFLTHVTSWLA 174
++GVQ L T GY++ L+HV +A
Sbjct: 167 LYGVQGLLTFGYLVLLSHVGERMA 190
>AK002018-1|BAA92038.1| 735|Homo sapiens protein ( Homo sapiens
cDNA FLJ11156 fis, clone PLACE1006956, weakly similar to
ATP-DEPENDENT PERMEASE MDL1. ).
Length = 735
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 245 VFGVQALATIGYIIFLTHVTSWLA 174
++GVQ L T GY++ L+HV +A
Sbjct: 201 LYGVQGLLTFGYLVLLSHVGERMA 224
>AF047690-1|AAD15748.1| 718|Homo sapiens ATP-binding cassette
protein M-ABC1 protein.
Length = 718
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 245 VFGVQALATIGYIIFLTHVTSWLA 174
++GVQ L T GY++ L+HV +A
Sbjct: 184 LYGVQGLLTFGYLVLLSHVGERMA 207
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,641,556
Number of Sequences: 237096
Number of extensions: 351807
Number of successful extensions: 435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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