Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17g24
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.35 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.5  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 784 FSLFDKDGDGTITTKELGTVMRS--LGQNPTEAELQDMINEVDADGNGTIDFPEF 626
           FS +D++ +G +  +EL     +  L +      L  MI+  D DG+G ++  EF
Sbjct: 242 FSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEF 296



 Score = 25.4 bits (53), Expect = 0.61
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 110 CASQCDGISVGLVSAPNLYL--CICVRACLCARRP 12
           CAS+  GI      +PN  +  C+C+R C    RP
Sbjct: 82  CASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRP 116


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  TRARHLYHHIATHTGRLPF 127
           TR  HL  H+  HTG  P+
Sbjct: 20  TRDHHLKTHMRLHTGEKPY 38


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 467 DLLVSEFLS--EVGHDVAQLGRGDEAVAVLVE 556
           DL  S+ L   E+ HDVA  G+G E V++ V+
Sbjct: 163 DLNTSQLLKQVEIPHDVATTGKG-ELVSLTVQ 193


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 83  HLYHHIATHTGRLPFVPLQLNFSYIVK--LTEYFKS 184
           HL +H+  H G  PF   + ++S + K  L  + KS
Sbjct: 3   HLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKS 38


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 75  EPDTYTITLRRTPDVFPLYRYS 140
           EP+    T   TP  FP Y YS
Sbjct: 320 EPNDEVATYDNTPRDFPYYMYS 341



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 95  HIATHTGRLPFV 130
           H+ THTG  P+V
Sbjct: 194 HMRTHTGEKPYV 205


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 404 HHDDVEVSRRLVCV*KAENLNIHFVS*HTILA 309
           H    E     VC+   E + +HF + H  +A
Sbjct: 183 HQSGSEAEAEFVCIATPEAIELHFTTDHPSVA 214


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 577  FLPRYPCPSSCAP 615
            F P Y  P++CAP
Sbjct: 1803 FSPEYDDPANCAP 1815


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 583 PRYPCPSSCAPSLSRTRESLSCRFRP 660
           P  P P    P++ R R  L+ RF P
Sbjct: 372 PPTPFPRFIPPNVYRFRPPLNPRFEP 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,083
Number of Sequences: 438
Number of extensions: 2858
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)