Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17g18
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.0  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 268 GLGVNTDVDLVKIIEAGRYISNFLG 194
           G+  + +VD +  + +G+YIS+F+G
Sbjct: 250 GMKESVEVDQLSWLGSGQYISDFVG 274


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 268 GLGVNTDVDLVKIIEAGRYISNFLG 194
           G+  + +VD +  + +G+YIS+F+G
Sbjct: 288 GMKESVEVDQLSWLGSGQYISDFVG 312


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 167 PVNFGFGRFSKEVGNVS 217
           P  FG+G +  E GNVS
Sbjct: 32  PPLFGWGSYGPEAGNVS 48



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 549 INCSVIWDCHTELLDACTVLESLGLVNVL 635
           ++CSV W+ H  + ++ T +  L ++ ++
Sbjct: 47  VSCSVSWEVHDPVTNSDTYIGFLFVLGLI 75


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 339 SADARMHAARAVTLPPKT*SISCMAWES 256
           SA   M+ ++++T PPK  + S   WE+
Sbjct: 300 SALQEMNKSKSITEPPKNCADSGSIWET 327


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 726 IDYEREPSNTQPNLEHLNLTEIDDR 652
           IDYE   S  QP+L  LN  E   R
Sbjct: 302 IDYENVQSLYQPHLRGLNGLEFAGR 326


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 192 FPRKLEMYRPASIIFTRSTSVLT 260
           F   L MY PASI+  ++ S  T
Sbjct: 360 FKETLRMYPPASILMRKAISDYT 382


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 517  HQAILHNSPSQSIVLLSGTATRS 585
            HQ I+H  P    + L+ T T S
Sbjct: 1359 HQLIVHAPPHSPQITLTATTTNS 1381


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 354 LPSPDSADARMHAARAVTLPPK 289
           +PSPD  D  +     + LPP+
Sbjct: 446 VPSPDPLDLAIPVRETLILPPR 467


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 36  YLITIIECLFLSLNRYCNINYLY 104
           YL+     +F +L  Y  +NY Y
Sbjct: 307 YLVMCFVFVFAALLEYAAVNYTY 329


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 583 SVWQSQITEQLIAMGCYE 530
           S+++S   EQ+  +GC+E
Sbjct: 39  SMYESNSEEQMKKLGCFE 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,788
Number of Sequences: 438
Number of extensions: 4908
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)