Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17g16
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 336 ESYLSNGNALYFGHSSRTMSLQKSFRECNSMSSFEKYSSLDRL 464
           E+Y+++GN +       +++  KSF + NS +       LDRL
Sbjct: 547 ETYINSGNKI-------SLATSKSFIKANSQTEVSNSKKLDRL 582


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 559 IRAVSGHYNTDEPLPEDIVKNLQNIRSHMAGFNLSREL 446
           +R  +  YN+ + LPE +  + +++R     +N  R+L
Sbjct: 263 LRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDL 300


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 340 RICRTATRCISATALGLCP 396
           + C + T+C  A   GLCP
Sbjct: 438 KTCNSKTKCCFAQDDGLCP 456


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 743 RKTVLIVFQ*SWSAVPKIWSFIKAFTHKGK 654
           R T +   Q +W A+  I +     THKGK
Sbjct: 550 RDTYIHAQQIAWMALKMIQACSHHLTHKGK 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,627
Number of Sequences: 438
Number of extensions: 5429
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)