Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17g09
         (490 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022785-1|AAH22785.2|  495|Homo sapiens zinc finger protein 212...    31   2.8  
BC131569-1|AAI31570.1|  281|Homo sapiens ZNF783 protein protein.       29   6.5  
AK131504-1|BAD18648.1|  281|Homo sapiens protein ( Homo sapiens ...    29   6.5  
AF442761-1|AAL37887.1|  107|Homo sapiens immunoglobulin kappa li...    29   8.6  

>BC022785-1|AAH22785.2|  495|Homo sapiens zinc finger protein 212
           protein.
          Length = 495

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = -1

Query: 433 SRAVDSGEVAAVAFNKLQVSSSTEKPFFEIFAEERCTQTSSRALIEFMAEVDGRCNFFEK 254
           S  + S  + + A  K     +TE   + + A  +  +    +    +  ++GR    EK
Sbjct: 15  STPLTSSTLPSQATEKSSYFQTTEISLWTVVAAIQAVEKKMESQAARLQSLEGRTGTAEK 74

Query: 253 FQADCSLEIMFLGTQRAHRNRKLGTILCKYSI 158
             ADC    +  G Q   +   LGT+L +Y +
Sbjct: 75  KLADCEKMAVEFGNQLEGKWAVLGTLLQEYGL 106


>BC131569-1|AAI31570.1|  281|Homo sapiens ZNF783 protein protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -1

Query: 370 STEKPFFEIFAEERCTQTSSRALIEFMAEVDGRCNFFEKFQADCSLEIMFLGTQRAHRNR 191
           STE   + + A  +  +    + +  +  ++GR    EK  ADC    +  G Q   +  
Sbjct: 38  STEITLWTVVAAIQALEKKVDSCLTRLLTLEGRTGTAEKKLADCEKTAVEFGNQLEGKWA 97

Query: 190 KLGTILCKYSI 158
            LGT+L +Y +
Sbjct: 98  VLGTLLQEYGL 108


>AK131504-1|BAD18648.1|  281|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16713 fis, clone UTERU2033577, moderately
           similar to Homo sapiens mRNA for repressor protein. ).
          Length = 281

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -1

Query: 370 STEKPFFEIFAEERCTQTSSRALIEFMAEVDGRCNFFEKFQADCSLEIMFLGTQRAHRNR 191
           STE   + + A  +  +    + +  +  ++GR    EK  ADC    +  G Q   +  
Sbjct: 38  STEITLWTVVAAIQALEKKVDSCLTRLLTLEGRTGTAEKKLADCEKTAVEFGNQLEGKWA 97

Query: 190 KLGTILCKYSI 158
            LGT+L +Y +
Sbjct: 98  VLGTLLQEYGL 108


>AF442761-1|AAL37887.1|  107|Homo sapiens immunoglobulin kappa light
           chain variable region protein.
          Length = 107

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -1

Query: 169 KYSIEVAKKLKTGPVSSLTLDDLGQNY----SSMKPRDITTKYPKFCQAL 32
           K  I  A  L+TG  S  + D  G ++    SS++P DI T Y + C++L
Sbjct: 45  KLLIYDASNLETGVPSRFSGDGYGTDFTFTISSLQPEDIATYYCQQCESL 94


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,810,877
Number of Sequences: 237096
Number of extensions: 1255524
Number of successful extensions: 2475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2475
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)