Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17g02
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su... 254 9e-69
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 29 0.83
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 27 2.5
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 27 3.4
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo... 27 3.4
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 27 4.4
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 5.9
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 26 5.9
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.8
>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 366
Score = 254 bits (623), Expect = 9e-69
Identities = 124/205 (60%), Positives = 154/205 (75%)
Frame = -1
Query: 847 GTVPVPIVFRGXNGAASGVAAQHSQCFGAWYSHCPGLKVXMPYSAEDAKGLLKAAIRDPD 668
G PIVFRG NG A+ VAAQHSQ F WY PGLKV PYSAEDA+GLLKAAIRDP+
Sbjct: 141 GIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPN 200
Query: 667 PVVMLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQ 488
PVV+LE+EI+YG FP+S EA S+DFVLP G AKVER G+ IT+V TAL+AA++
Sbjct: 201 PVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADK 260
Query: 487 LAGSKGIECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPS 308
L G+E EV+NLR+IRP+D +TIA S+ KT+ ++TV+Q + Q GIG+EI A++MES +
Sbjct: 261 LKADYGVEAEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDA 320
Query: 307 FFELDAPVWRVCGADVPMPYARTLE 233
F LDAPV RV ADVPMPY+ +E
Sbjct: 321 FDYLDAPVERVSMADVPMPYSHPVE 345
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 29.1 bits (62), Expect = 0.83
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 397 KTHHLITVEQGWP---QSGIGAEICARVMESPSFFEL 296
K H L+ ++GWP +SG+G ++ + + FFE+
Sbjct: 222 KRHVLVQPQEGWPPLVRSGLGMKLTGQSQDLECFFEI 258
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 395 FGNGPSDRVEIHWPYCS*IYYFTFYTL 475
+G G S +E ++ YCS I+Y+ TL
Sbjct: 759 YGWGASSEMECYFSYCSLIFYYQATTL 785
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 557 GGSAYHASVRWTRHRHRAQGR*TTGWKQGYRM 462
G +A+ S+RW HRA R T K Y +
Sbjct: 132 GAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNV 163
>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 658 MLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLV 533
M + +M GIPFP + E ++ V G ++ +G+H ++
Sbjct: 201 MTDGGVMMGIPFPQAQELAAQTMV---GTGRMVLQGQHPAMI 239
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 135 DSLFYWACTAL 167
D+LF+WACTAL
Sbjct: 34 DNLFHWACTAL 44
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 270 PHTRHTGASSSKNDGDSMTRAQISA 344
PH+RHT + G S++R SA
Sbjct: 45 PHSRHTSTVAGTEGGSSLSRRHTSA 69
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 579 IGSTKSLDWA-SSDIGNGIP 635
+ S+KSLDWA D G G+P
Sbjct: 1 MSSSKSLDWADDEDYGTGLP 20
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 83 IKYVQIIRTLLIYICLWRFPVLLGLHCTDFVAE 181
I+Y+ L I CL FP+LL ++ T+ V E
Sbjct: 90 IRYLFTFGALCILGCLVLFPILLPVNATNGVGE 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,403
Number of Sequences: 5004
Number of extensions: 60198
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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