Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17g01
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    29   0.051
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 0.051
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -2

Query: 728 MVMHDPFAMRPFFGY--NFGDYLKHWLSMPQPGRNMPKIFHVNWFRKDEQGKFLWPG--F 561
           ++M+  F +  + G   N  +YL H  +    GRN  K      FR D    +L PG  F
Sbjct: 413 IIMYIAFIILQYAGLLRNRSEYLNHLRANVAEGRNQRKNVLDRLFRMDRDAVYLQPGMSF 472

Query: 560 GE 555
           GE
Sbjct: 473 GE 474


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 602 FRKDEQGKFLWPGFGE 555
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 602 FRKDEQGKFLWPGFGE 555
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 18/74 (24%), Positives = 27/74 (36%)
 Frame = +1

Query: 373 SMASDSCSQKSLGMLNSSFMSTALRFSVFRAPALGMYPSGVSAWQGSPSQRRKIQSKTRE 552
           S  SDS S         S     +  SV  A   G YP+ +  W   P +   +  +  +
Sbjct: 444 SPQSDSSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTLLPQWCLPPREAPLVGVQPHQ 503

Query: 553 FSPKPGQRNLPCSS 594
            S  P  + L  S+
Sbjct: 504 DSATPADQPLDLSA 517


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 604 QLTWKILGMFRPGCGIDSQCF 666
           ++ W   G+FR  C ID + F
Sbjct: 118 EVVWLSHGIFRSSCDIDVEFF 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,612
Number of Sequences: 438
Number of extensions: 4957
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)