Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f20
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   2.0  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   2.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.6  

>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 160 EKDVRDLKSSKFEQVATSLRRWC*VRQGPSSP 255
           +++ RD  S  FEQ A   R++  + +GPS P
Sbjct: 365 KREQRDANSHAFEQTANGKRQFRFMTRGPSDP 396


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 397 ELLCAVRLQRSASAGMAHERYQLDPGAQEDVKQFLTLQQKGMAHLLDTARKDLAAL 230
           ELLC V  +++ S  +      LD        Q + +QQ  +++ L   + D AAL
Sbjct: 146 ELLCLVTRKKAGSQPVEESNTSLDMSTISSELQNIRIQQMNLSNELSRIQVDNAAL 201


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -3

Query: 285 NRRAWRI--YWTRRGRTLPHSTPSPKG 211
           N R W+I  YW +RG     S P P G
Sbjct: 43  NNRNWQIPLYWQQRGNEFQASPPPPLG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,446
Number of Sequences: 5004
Number of extensions: 40070
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)