Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17f15
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 47 7e-07
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 47 7e-07
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 0.59
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 2.4
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 5.5
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 7.3
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 24 7.3
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 24 7.3
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 23 9.6
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 23 9.6
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 47.2 bits (107), Expect = 7e-07
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = -3
Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRAL 62
V+DK + +FD +++ KEVP +K I+ +V+ +R+K+ GSLAR A+
Sbjct: 12 VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAI 60
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 47.2 bits (107), Expect = 7e-07
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = -3
Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRAL 62
V+DK + +FD +++ KEVP +K I+ +V+ +R+K+ GSLAR A+
Sbjct: 12 VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAI 60
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.5 bits (58), Expect = 0.59
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 279 KXHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 181
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 2.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 160 HMWVXQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 273
+M Q TP HE WT SS L H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 174 SNNTWLFNLSRTFPLDHFFFLAL 242
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 166 TYEKLYKEVPXYKLITPAVVS 104
TY+K+Y E P K++ + S
Sbjct: 96 TYKKIYNEYPPTKILVQEIAS 116
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 262 SSSVXFEAVWPKPSRPSWAASLNWKA 339
S V E+V+PKP S+ +N K+
Sbjct: 389 SDKVKGESVYPKPESESYDVEMNGKS 414
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 120 VISLYXGTSLYSFSYVGXSNNTWLFNLSR 206
++ LY G Y +S +WLF+LS+
Sbjct: 554 LVPLYEGFQNYYYSCHNGRKLSWLFHLSK 582
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 23.4 bits (48), Expect = 9.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 96 NLSDTTAGVISLYXGTSLYSFSYVGXSNNT---WLFNLSRTFPLDHF 227
+LSD VIS G + Y F V S+ T W N + +P+ F
Sbjct: 222 SLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFPYPIITF 268
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 23.4 bits (48), Expect = 9.6
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 205 RDKLNNQVLFDXPTYEKLYKEVPXYK-LITPAVVSERLKVRGSLARRALIE 56
R++L V + +L ++ Y+ + PA++ + ++ R SLA+ L+E
Sbjct: 163 RNELKVLVGLNLVRLSQLNLDIDTYRDHVLPAIIEQIIECRDSLAQEYLVE 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,985
Number of Sequences: 5004
Number of extensions: 22322
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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