Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17f15
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 71 2e-13
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 71 2e-13
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 7e-09
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.30
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 27 2.8
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 27 2.8
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 27 3.8
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 27 3.8
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 3.8
02_05_0114 + 25958834-25961296 27 3.8
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 5.0
10_05_0041 - 8469769-8470164 27 5.0
10_01_0146 - 1719997-1720386,1721498-1721515 26 8.7
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 26 8.7
04_04_0176 - 23329589-23331043 26 8.7
04_03_0326 + 14403825-14403937,14404030-14404261 26 8.7
02_02_0618 - 12190727-12191698 26 8.7
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 26 8.7
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = -3
Query: 205 RDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRAL 62
++K+NN VLFD TY+KL EVP YK ITP+V+SERL++ GSLARRA+
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAM 81
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = -3
Query: 205 RDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRAL 62
++K+NN VLFD TY+KL EVP YK ITP+V+SERL++ GSLARRA+
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAI 81
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 56.0 bits (129), Expect = 7e-09
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = -3
Query: 205 RDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLK 92
++K+NN VLFD TY+KL EVP YK ITP+V+SERL+
Sbjct: 968 KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 305 REGFGQTASKXTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 180
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 208 LFLWTTSSSWLCRHRILPSSSVXFEAVWPKPSRPSWAASL 327
+F W S L R+R+L + F+A+ P + SWAA L
Sbjct: 65 VFTWNCMVSGLIRNRMLAEARKVFDAM-PVRNSVSWAALL 103
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 338 AFQFKDAAQEGREGFGQTASKXTEEEGRIRWRQSQEEE 225
A + + A+E EG G K EEE R R R+ +EEE
Sbjct: 461 AEELERKAEEEEEGGGGKGEKEREEEER-RQREKEEEE 497
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 133 TVGLPCTVSHMWVXQTTPGCSTCHELFLWTTSSSWLCRHRILPS 264
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 264 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 306
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 193 STCHELFLWTTSSSWLCRHRILPSSSVXF--EAVWPKPSRP 309
STCH++ L S WL L S + F E VW P P
Sbjct: 261 STCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEP 301
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 93 FNLSDTTAGVISLYXGTSLYSFSYVGX--SNNTWLFNLSRTFPLDHFFFL 236
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>02_05_0114 + 25958834-25961296
Length = 820
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 133 TVGLPCTVSHMWVXQTTPGCSTCHELFLWTTSSSWLCRHRILPS 264
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 146 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 188
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 93 FNLSDTTAGVISLYXGTSLYSFSYVGX--SNNTWLFNLSRTFPLDHFFFL 236
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 774 FLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNLIFYFPLDIIKFL 823
>10_05_0041 - 8469769-8470164
Length = 131
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 320 AAQEGREGFGQTASKXTEEEGRIRWRQSQEEEV 222
A + GREG G+ +S ++ R RW+ +++
Sbjct: 31 ARERGREGGGEASSTTIDDGERRRWQDGLRDDL 63
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 291 PNSLKXHRRRRKDPVAAKPRRRS 223
P+ RRRR +P +PRRR+
Sbjct: 83 PDDGGQRRRRRSEPATTQPRRRA 105
>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 196 LNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSL 77
LN + D ++K +E Y LIT + +++ VRG+L
Sbjct: 1630 LNGMCIMDAQIFKKHIREF--YPLITKLICCDQMDVRGAL 1667
>04_04_0176 - 23329589-23331043
Length = 484
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 308 GREGFGQTASKXTEEEGRIRWRQSQEEEVVQR 213
GR+GF + EE GR R R +EE +R
Sbjct: 405 GRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
>04_03_0326 + 14403825-14403937,14404030-14404261
Length = 114
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 169 PTYEKLYKEVPXYKLITPAVVSERLKVRGSLARR 68
P +++++++P +TP+ SERL+ +ARR
Sbjct: 46 PGIKEVWRQLPYPPFVTPSPSSERLQRDVEVARR 79
>02_02_0618 - 12190727-12191698
Length = 323
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +3
Query: 42 LFPXASMSALLAREPRTFNLSDTTAGVISLYXGTSLYSFSYVGXSNNTW 188
+F A++A PRT + D AGV L L F Y TW
Sbjct: 212 VFRALFFGAMIAETPRTIEIEDMEAGVFRL-----LLHFMYNDSLPETW 255
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 175 QTTPGCSTCHELFLWTTSSSWLCRHRILPSSSVXFEAVWPKPSRPSW 315
QT C+ + T+ + CR +L S V + V P P R S+
Sbjct: 301 QTPSYCNGEDKSLPLITAKQYSCREALLSSLVVAWSPVLPSPDRSSY 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,506,708
Number of Sequences: 37544
Number of extensions: 158753
Number of successful extensions: 473
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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