Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f15
         (339 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M64716-1|AAA16105.1|  125|Homo sapiens ribosomal protein protein.      86   3e-17
BC004986-1|AAH04986.1|  125|Homo sapiens ribosomal protein S25 p...    86   3e-17
BC004294-1|AAH04294.1|  125|Homo sapiens ribosomal protein S25 p...    86   3e-17
BC003537-1|AAH03537.1|  125|Homo sapiens ribosomal protein S25 p...    86   3e-17
AB061844-1|BAB79482.1|  125|Homo sapiens ribosomal protein S25 p...    86   3e-17
BC115387-1|AAI15388.1| 1157|Homo sapiens DUSP27 protein protein.       28   6.4  
AL158837-4|CAH69958.1| 1158|Homo sapiens novel protein protein.        28   6.4  
AF119045-1|AAK02011.1|  661|Homo sapiens unknown protein.              28   6.4  

>M64716-1|AAA16105.1|  125|Homo sapiens ribosomal protein protein.
          Length = 125

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 43/55 (78%), Positives = 45/55 (81%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNN VLFD  TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL E   K
Sbjct: 40  VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94


>BC004986-1|AAH04986.1|  125|Homo sapiens ribosomal protein S25
           protein.
          Length = 125

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 43/55 (78%), Positives = 45/55 (81%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNN VLFD  TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL E   K
Sbjct: 40  VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94


>BC004294-1|AAH04294.1|  125|Homo sapiens ribosomal protein S25
           protein.
          Length = 125

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 43/55 (78%), Positives = 45/55 (81%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNN VLFD  TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL E   K
Sbjct: 40  VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94


>BC003537-1|AAH03537.1|  125|Homo sapiens ribosomal protein S25
           protein.
          Length = 125

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 43/55 (78%), Positives = 45/55 (81%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNN VLFD  TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL E   K
Sbjct: 40  VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94


>AB061844-1|BAB79482.1|  125|Homo sapiens ribosomal protein S25
           protein.
          Length = 125

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 43/55 (78%), Positives = 45/55 (81%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNN VLFD  TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL E   K
Sbjct: 40  VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94


>BC115387-1|AAI15388.1| 1157|Homo sapiens DUSP27 protein protein.
          Length = 1157

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 250  RILPSSSVXFEAVWPKPSRPSWAASLNWK 336
            R  P SS   E+  P+P RP+WA S +W+
Sbjct: 1043 RRTPESSEREES--PEPQRPNWARSRDWE 1069


>AL158837-4|CAH69958.1| 1158|Homo sapiens novel protein protein.
          Length = 1158

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 250  RILPSSSVXFEAVWPKPSRPSWAASLNWK 336
            R  P SS   E+  P+P RP+WA S +W+
Sbjct: 1043 RRTPESSEREES--PEPQRPNWARSRDWE 1069


>AF119045-1|AAK02011.1|  661|Homo sapiens unknown protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 250 RILPSSSVXFEAVWPKPSRPSWAASLNWK 336
           R  P SS   E+  P+P RP+WA S +W+
Sbjct: 546 RRTPESSEREES--PEPQRPNWARSRDWE 572


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,778,169
Number of Sequences: 237096
Number of extensions: 977881
Number of successful extensions: 2034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)