Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f15
         (339 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...    95   2e-20
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...    95   2e-20
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...    95   2e-20
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...    93   8e-20

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 46/55 (83%), Positives = 49/55 (89%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNNQVLFD  TYEKLYKEVP YKLITP+VVSERLK+RGSLA+RALIE   K
Sbjct: 39  VRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREK 93


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 46/55 (83%), Positives = 49/55 (89%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNNQVLFD  TYEKLYKEVP YKLITP+VVSERLK+RGSLA+RALIE   K
Sbjct: 39  VRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREK 93


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 46/55 (83%), Positives = 49/55 (89%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNNQVLFD  TYEKLYKEVP YKLITP+VVSERLK+RGSLA+RALIE   K
Sbjct: 39  VRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREK 93


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score = 93.1 bits (221), Expect = 8e-20
 Identities = 45/55 (81%), Positives = 48/55 (87%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNNQVLFD  TYEKLYKEVP YKLITP+VVSERLK+RGSL +RALIE   K
Sbjct: 35  VRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLDKRALIELREK 89


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,528
Number of Sequences: 53049
Number of extensions: 257559
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)