Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f15
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    80   3e-16
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    30   0.37 
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   4.5  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    27   4.5  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   4.5  
Z66516-9|CAN99713.1|  455|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z66516-8|CAB60308.2|  459|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z50015-2|CAN99700.1|  455|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z50015-1|CAB60292.2|  459|Caenorhabditis elegans Hypothetical pr...    26   6.0  
L39212-1|AAC37255.1|  459|Caenorhabditis elegans transcription f...    26   6.0  
AL021172-3|CAN99704.1|  455|Caenorhabditis elegans Hypothetical ...    26   6.0  
AL021172-2|CAB60307.2|  459|Caenorhabditis elegans Hypothetical ...    26   6.0  
Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    26   7.9  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    26   7.9  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    26   7.9  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 40/55 (72%), Positives = 43/55 (78%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXGK 44
           VRDKLNN VLFD  TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L E   K
Sbjct: 36  VRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAK 90


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 311 EGREGFGQTASKXTEEEGRIRWRQSQEEEVVQRK 210
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 190 CSTCHELFLWTTSSSWLCRHRILPSSSVXFEAVWPKPSRP 309
           C    + F+     +  C   +LP+ S+  E   PKP RP
Sbjct: 44  CRMQDDCFIGEICDNGFCCPNVLPTFSLQREPTSPKPKRP 83


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 270 RRRRKDPVAAKPRRRSGP 217
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 208 VRDKLNNQVLFDXPTYEKLYKEVPXYKLITPAVVSERL-KVRGSL 77
           V  K  N +LFD    EKL++++    +  P  V E+L +VR +L
Sbjct: 688 VYGKNTNCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 270 RRRRKDPVAAKPRRRSGP 217
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>Z66516-9|CAN99713.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 NNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXG 47
           NN+ L + PT  K  +  P + +ITP    +R     S A  A++ A G
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSA-TAVVTATG 415


>Z66516-8|CAB60308.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 NNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXG 47
           NN+ L + PT  K  +  P + +ITP    +R     S A  A++ A G
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSA-TAVVTATG 419


>Z50015-2|CAN99700.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 NNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXG 47
           NN+ L + PT  K  +  P + +ITP    +R     S A  A++ A G
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSA-TAVVTATG 415


>Z50015-1|CAB60292.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 NNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXG 47
           NN+ L + PT  K  +  P + +ITP    +R     S A  A++ A G
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSA-TAVVTATG 419


>L39212-1|AAC37255.1|  459|Caenorhabditis elegans transcription
           factor protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 NNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXG 47
           NN+ L + PT  K  +  P + +ITP    +R     S A  A++ A G
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSA-TAVVTATG 419


>AL021172-3|CAN99704.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 NNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXG 47
           NN+ L + PT  K  +  P + +ITP    +R     S A  A++ A G
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSA-TAVVTATG 415


>AL021172-2|CAB60307.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 193 NNQVLFDXPTYEKLYKEVPXYKLITPAVVSERLKVRGSLARRALIEAXG 47
           NN+ L + PT  K  +  P + +ITP    +R     S A  A++ A G
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSA-TAVVTATG 419


>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +1

Query: 130 CTVGLPCTVSHMW----VXQTTPGCSTCHELFLWTTSSSWL 240
           C +G P  V++ +      QTTP    C    +W+  SSW+
Sbjct: 91  CCIGTPKIVNNWYHCASTSQTTPTAPCCPTGGVWSDWSSWV 131


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -2

Query: 293 GQTASKXTEEEGRIRWRQSQEEEVVQRKSS-----*QVEQPGVV*XTHI*ETVQGSPTVQ 129
           GQ+AS+      R R   S E+EVV+   S       VEQP +     + +TV+   T+ 
Sbjct: 144 GQSASRPQANRNRQRASSSDEDEVVESSRSRVEIGNGVEQPKIDIGPRVAQTVEEPVTLA 203

Query: 128 A 126
           A
Sbjct: 204 A 204


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 96  NLSDTTAGVISLYXGTSLYSFSYVGXSNNTWLFNLSRTFPLD 221
           N S+    + SLY   +L SFS+V   N+  L ++     +D
Sbjct: 737 NSSNVPTSIASLYNSLNLPSFSHVAPDNDNALESMDCDVKID 778


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 96  NLSDTTAGVISLYXGTSLYSFSYVGXSNNTWLFNLSRTFPLD 221
           N S+    + SLY   +L SFS+V   N+  L ++     +D
Sbjct: 759 NSSNVPTSIASLYNSLNLPSFSHVAPDNDNALESMDCDVKID 800


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 96  NLSDTTAGVISLYXGTSLYSFSYVGXSNNTWLFNLSRTFPLD 221
           N S+    + SLY   +L SFS+V   N+  L ++     +D
Sbjct: 759 NSSNVPTSIASLYNSLNLPSFSHVAPDNDNALESMDCDVKID 800


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,032,976
Number of Sequences: 27780
Number of extensions: 133670
Number of successful extensions: 384
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)