Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f15
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   4.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   9.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   9.4  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 90  TFNLSDTTAGVISLYXGTSLYSFSYVGXSNNTWL-FNL 200
           T+N++++T  +  LY G S   F  +   + + L FNL
Sbjct: 114 TYNITNSTPLLKKLYGGNSTIIFLLIRFKSFSLLNFNL 151


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 261 RKDPVAAKPRRRSGPKEKFVTS*TTRC 181
           R  P++ K   RSG +E+F+     RC
Sbjct: 79  RYQPISYKWITRSGTREQFIDM-VARC 104



 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +1

Query: 226 SSSWLCRHR 252
           S+ W+C HR
Sbjct: 375 SNGWICEHR 383


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 298 PSRPSWAASLNWKA 339
           P    WA +++WKA
Sbjct: 93  PLEIGWAITVSWKA 106


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 75  REEHSSKLXEKGLIKTGSPTPWAG 4
           +++H S +   G  ++ SP+P  G
Sbjct: 97  QQDHGSGMDGMGGYRSASPSPGMG 120


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 115 AVVSERLKVRG 83
           AVVS RLKV G
Sbjct: 559 AVVSPRLKVHG 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,986
Number of Sequences: 438
Number of extensions: 1676
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)