Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17f14
(823 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 53 4e-09
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 53 4e-09
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 25 0.64
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 2.6
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 2.6
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 52.8 bits (121), Expect = 4e-09
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Frame = -1
Query: 823 KCLLQIQQGG---NVPQKYNGMVDCARQLYAEGGMRSIYRGSVATVLRDAPASGMYFMTY 653
K LLQ+Q + Q+Y GM+DC ++ E G S +RG++A V+R P + F
Sbjct: 35 KLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFK 94
Query: 652 EWLKERLM--PEDASAKLKLLVTTVA-GGCAGIANWLVGMPADVLKSRL-----QTAPEG 497
+ K+ + + + L+ V +A GG AG + P D ++RL + E
Sbjct: 95 DKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGER 154
Query: 496 TYPNGMRDVFKQLMEKEGPTALYKGVTPVMIRAFPANAACFVGF 365
+ G+ + ++ + +G T LY+G V ++ A + GF
Sbjct: 155 EF-TGLGNCLTKIFKADGITGLYRGF-GVSVQGIIIYRAAYFGF 196
Score = 27.9 bits (59), Expect = 0.12
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Frame = -1
Query: 784 QKYNGMVDCARQLYAEGGMRSIYRGSVATVLRDAPASGMYFMTYEWLKERL-----MPED 620
+++ G+ +C +++ G+ +YRG +V YF Y+ + L P
Sbjct: 154 REFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFL 213
Query: 619 ASAKLKLLVTTVAGGCAGIANWLVGMPADVLKSRL-----QTAPEGTYPNGMRDVFKQLM 455
S + +VTTVAG +V P D ++ R+ + E Y + + + +
Sbjct: 214 ISWGIAQVVTTVAG--------IVSYPFDTVRRRMMMQSGRAKSEILYKSTLH-CWATIY 264
Query: 454 EKEGPTALYKGVTPVMIR 401
+ EG A +KG ++R
Sbjct: 265 KTEGGNAFFKGAFSNILR 282
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 52.8 bits (121), Expect = 4e-09
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Frame = -1
Query: 823 KCLLQIQQGG---NVPQKYNGMVDCARQLYAEGGMRSIYRGSVATVLRDAPASGMYFMTY 653
K LLQ+Q + Q+Y GM+DC ++ E G S +RG++A V+R P + F
Sbjct: 35 KLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFK 94
Query: 652 EWLKERLM--PEDASAKLKLLVTTVA-GGCAGIANWLVGMPADVLKSRL-----QTAPEG 497
+ K+ + + + L+ V +A GG AG + P D ++RL + E
Sbjct: 95 DKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGER 154
Query: 496 TYPNGMRDVFKQLMEKEGPTALYKGVTPVMIRAFPANAACFVGF 365
+ G+ + ++ + +G T LY+G V ++ A + GF
Sbjct: 155 EF-TGLGNCLTKIFKADGITGLYRGF-GVSVQGIIIYRAAYFGF 196
Score = 27.9 bits (59), Expect = 0.12
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Frame = -1
Query: 784 QKYNGMVDCARQLYAEGGMRSIYRGSVATVLRDAPASGMYFMTYEWLKERL-----MPED 620
+++ G+ +C +++ G+ +YRG +V YF Y+ + L P
Sbjct: 154 REFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFL 213
Query: 619 ASAKLKLLVTTVAGGCAGIANWLVGMPADVLKSRL-----QTAPEGTYPNGMRDVFKQLM 455
S + +VTTVAG +V P D ++ R+ + E Y + + + +
Sbjct: 214 ISWGIAQVVTTVAG--------IVSYPFDTVRRRMMMQSGRAKSEILYKSTLH-CWATIY 264
Query: 454 EKEGPTALYKGVTPVMIR 401
+ EG A +KG ++R
Sbjct: 265 KTEGGNAFFKGAFSNILR 282
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 25.4 bits (53), Expect = 0.64
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +2
Query: 206 YYSILNNNVCDIIG-LFYYNLTPTTLHFSIIFSYYYFTLSKVWCNPIQELHSHLKTNKTS 382
YY LN + + G L+Y++ T + ++++ Y + C + + + S
Sbjct: 301 YYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKYRNAFKQTICCKTRIIGRRSWVTRES 360
Query: 383 SICWESSDHHRGYSFIQCS 439
IC SS S +CS
Sbjct: 361 QICNNSSSDKERNSSFKCS 379
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 2.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 652 EWLKERLMPEDASAKLKLLVTTVA 581
+WL ERL D +LK L T A
Sbjct: 89 QWLDERLRFNDFGGRLKYLTLTDA 112
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 2.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 652 EWLKERLMPEDASAKLKLLVTTVA 581
+WL ERL D +LK L T A
Sbjct: 89 QWLDERLRFNDFGGRLKYLTLTDA 112
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,151
Number of Sequences: 438
Number of extensions: 5278
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -