Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f13
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF139520-1|AAD33830.1|  176|Caenorhabditis elegans warthog prote...    29   1.6  
AF000298-2|AAC48258.1|  176|Caenorhabditis elegans Warthog (hedg...    29   1.6  
Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    27   6.3  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    27   6.3  
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    27   6.3  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    27   6.3  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -1

Query: 511  QQERTKTIKNEIDHRCSSRPCGYRHRCPPY-RGLP*DRSV*IRRQPRWSLQLQFRDFQRH 335
            Q ER K +KN++ +R SSR  G  H+ P + R LP D     R+  R + Q +F+  +  
Sbjct: 2525 QLER-KFLKNKVHNRRSSRAPGIHHQRPLHPRWLPTDHET-DRKDSRAASQFRFQHMRSK 2582

Query: 334  R 332
            R
Sbjct: 2583 R 2583


>AF139520-1|AAD33830.1|  176|Caenorhabditis elegans warthog protein
           WRT-5 protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 306 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 416
           PS H+ +YA C  ++ + +C  +  W    T+ S GS
Sbjct: 48  PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84


>AF000298-2|AAC48258.1|  176|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 5, isoform a protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 306 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 416
           PS H+ +YA C  ++ + +C  +  W    T+ S GS
Sbjct: 48  PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84


>Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical
           protein ZK1053.7 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 264 VRGSYSYTNTDGKPETITYF 205
           ++ +YSY N DG P + TY+
Sbjct: 112 IKDTYSYDNVDGTPISCTYY 131


>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 230 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 117
           A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 230 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 117
           A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 230 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 117
           A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 230 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 117
           A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,888,673
Number of Sequences: 27780
Number of extensions: 227811
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)