Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17f12
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 29 0.61
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 27 2.5
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 27 3.3
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 27 3.3
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 27 3.3
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 27 3.3
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 5.7
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 5.7
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.5
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.5
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 7.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 7.5
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 26 7.5
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 536 FHNKLSQLTYVTSSASCPSYPKIL 607
+ N+LS+L YVTSS S P+Y + L
Sbjct: 691 YKNELSELMYVTSSYSQPAYMEFL 714
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 677 WGPPSKSVALKPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGT 534
W P+K+ + W +RY +++KP TS T T S+ T
Sbjct: 460 WAQPAKTQFRTAFTRSREWRRRYRVAPPAENEKPHTSRTNTASSLSST 507
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 3.3
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Frame = +2
Query: 5 AVKGSRSAKYLLFSFANFSRMSSTFVLGNLSTHDATMPSAVAG*RFSSTASPLWKVLG*T 184
A + R Y++F FA ++T V H + + F + L+ LG
Sbjct: 36 AARWLRICSYIMFGFALVCLFTNTIVF--FFKHTIYRGTLIQKEEFIDVPNTLF--LGCY 91
Query: 185 KM-FLGC---LCIRTISLQRPQGSSRLLYLLNSFSPALKSPVAFIV*S--FTKKSPM--- 337
M F C LC + S PQG LY+L FS A+ A+++ S TK++ +
Sbjct: 92 TMGFQSCINMLCFLS-SQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFS 150
Query: 338 IFLPSV 355
FLP++
Sbjct: 151 TFLPTI 156
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 3.3
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Frame = +2
Query: 5 AVKGSRSAKYLLFSFANFSRMSSTFVLGNLSTHDATMPSAVAG*RFSSTASPLWKVLG*T 184
A + R Y++F FA ++T V H + + F + L+ LG
Sbjct: 36 AARWLRICSYIMFGFALVCLFTNTIVF--FFKHTIYRGTLIQKEEFIDVPNTLF--LGCY 91
Query: 185 KM-FLGC---LCIRTISLQRPQGSSRLLYLLNSFSPALKSPVAFIV*S--FTKKSPM--- 337
M F C LC + S PQG LY+L FS A+ A+++ S TK++ +
Sbjct: 92 TMGFQSCINMLCFLS-SQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFS 150
Query: 338 IFLPSV 355
FLP++
Sbjct: 151 TFLPTI 156
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 3.3
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Frame = +2
Query: 5 AVKGSRSAKYLLFSFANFSRMSSTFVLGNLSTHDATMPSAVAG*RFSSTASPLWKVLG*T 184
A + R Y++F FA ++T V H + + F + L+ LG
Sbjct: 36 AARWLRICSYIMFGFALVCLFTNTIVF--FFKHTIYRGTLIQKEEFIDVPNTLF--LGCY 91
Query: 185 KM-FLGC---LCIRTISLQRPQGSSRLLYLLNSFSPALKSPVAFIV*S--FTKKSPM--- 337
M F C LC + S PQG LY+L FS A+ A+++ S TK++ +
Sbjct: 92 TMGFQSCINMLCFLS-SQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFS 150
Query: 338 IFLPSV 355
FLP++
Sbjct: 151 TFLPTI 156
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 3.3
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Frame = +2
Query: 5 AVKGSRSAKYLLFSFANFSRMSSTFVLGNLSTHDATMPSAVAG*RFSSTASPLWKVLG*T 184
A + R Y++F FA ++T V H + + F + L+ LG
Sbjct: 36 AARWLRICSYIMFGFALVCLFTNTIVF--FFKHTIYRGTLIQKEEFIDVPNTLF--LGCY 91
Query: 185 KM-FLGC---LCIRTISLQRPQGSSRLLYLLNSFSPALKSPVAFIV*S--FTKKSPM--- 337
M F C LC + S PQG LY+L FS A+ A+++ S TK++ +
Sbjct: 92 TMGFQSCINMLCFLS-SQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFS 150
Query: 338 IFLPSV 355
FLP++
Sbjct: 151 TFLPTI 156
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 266 NSFSPALKSPVAFIV*SFTKKSPMIFLPSVARRSFCSVNRRFFP 397
N++SPA+KSP A ++S +P+ +R S + N ++P
Sbjct: 175 NNYSPAVKSPAA------QRRSSSYMVPANSRGSPANYNTPYYP 212
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 653 ALKPSDCTSLWYQRYLK 603
AL ++CT +WY R+ K
Sbjct: 228 ALPDTECTQIWYSRFAK 244
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -1
Query: 394 EESPVDATKGSSRYRRQEDHWRFLGETSND 305
+ +P+D +G +Y+R+ +H+R + +ND
Sbjct: 1607 KSAPLDKLRGFMKYQRRSEHYRNPLKRTND 1636
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 381 LTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEK 271
L QKD+ + K+ I D +T+KA D S G++
Sbjct: 159 LNEQKDKKIKELKERINDLTYDYETLKANADDSEGKQ 195
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 360 LATDGKKIIGDFLVKLQTIKATGDF 286
LA DG + IGDF V T A+G++
Sbjct: 422 LAGDGNQTIGDFYVMNWTTIASGEY 446
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 582 EAEDVTYVNWLSLLWNGAAKATEMYQPS 499
+ +DV NWLS+ GA T Y PS
Sbjct: 790 KVQDVRKFNWLSMCTPGALPLTFSYFPS 817
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = -3
Query: 677 WGPPSKSVALKPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPLR 522
+G P + + + +S+ + F G + +K + L S C G E L+
Sbjct: 58 FGLPKRGILKTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQ 109
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 309 TIKATGDFSAGEKLFNKYSSLD 244
T+ AT D GE+L+N Y LD
Sbjct: 277 TMIATRDIKKGEQLWNTYGELD 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,581
Number of Sequences: 5004
Number of extensions: 57586
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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