Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f12
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    32   0.49 
03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438...    30   2.0  
01_06_1452 - 37457529-37458743                                         30   2.0  
02_02_0740 - 13581399-13581416,13581690-13581750,13582878-135829...    29   4.5  
08_02_1616 + 28260204-28262555                                         29   6.0  
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540...    28   7.9  

>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
 Frame = -2

Query: 813 AKLXATEMQME-------RSILIKKKSKNP-LTDK-GIESWYSEGETYDSKFTTLGSAFE 661
           AKL ATE+  +       RS+L +  S  P + D   + SWYS  E YD     +    E
Sbjct: 230 AKLSATELSEKNGVGCCFRSLLRQLLSDVPDVADIFALASWYSAAENYDQPIVVVIDDLE 289

Query: 660 ECRAEAVGLYLSLVPE-ILKI 601
           +C  + +G  + ++ E ++KI
Sbjct: 290 QCSGDVLGELVMMLSEWVIKI 310


>03_01_0594 -
           4385291-4385503,4385647-4385829,4385944-4386117,
           4386213-4386373,4386470-4386551,4386626-4386658,
           4386755-4387161,4387237-4387381,4387483-4387587,
           4387704-4387826,4387908-4388027,4388118-4388237,
           4388569-4388775,4388857-4389036,4389151-4389285,
           4389382-4389519,4389630-4389728,4389832-4389951,
           4390029-4390091
          Length = 935

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 732 GIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEILKIFGYEG-QEAEDVTYVN 556
           G+E+++ E    D +   L   FE+      GL  +   E LK+FG    +E  +   + 
Sbjct: 10  GLENFFDED--VDLENLPLEDVFEQLNTSQSGLSSADAAERLKLFGANRLEEKRENKIIK 67

Query: 555 WLSLLWN 535
           +LS +WN
Sbjct: 68  FLSFMWN 74


>01_06_1452 - 37457529-37458743
          Length = 404

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -2

Query: 714 SEGETYD--SKFTTLGSAFEECRAEAVGLYLSL-VP--EILKIFGYEGQEAEDVTYV 559
           S+G  +D  S+  T GSA    R EAVG+  SL +P  E++ +    G  AE +T V
Sbjct: 136 SQGGVFDVLSRVVTSGSACSTAREEAVGVLASLRIPEQELIGVSTRHGNLAESLTAV 192


>02_02_0740 -
           13581399-13581416,13581690-13581750,13582878-13582981,
           13583140-13583149,13583244-13583308
          Length = 85

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +2

Query: 452 MITKRARACACNQVLVEGWYISVALAAPFHNKLSQLTYVTSSASCPSYPKILSISGTKER 631
           M+     A  C++ L++ W +S A A    N L  L +      CP +P I  +S     
Sbjct: 1   MVRATRHADTCSRKLLQ-WGLSGARAGEKFNPLPALPWSLRRCRCPYWPPIARVSTCVVV 59

Query: 632 YSPTASARH 658
               A+ RH
Sbjct: 60  SESYATCRH 68


>08_02_1616 + 28260204-28262555
          Length = 783

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
 Frame = +1

Query: 352 GSETILL*RQQEILPGLG--LLDGEQAAPLQLQQTHDHETCAGVRLQPSLSGGLVH---- 513
           G  ++L   Q+   P  G  LLDG       L+        A V  +P L    +H    
Sbjct: 563 GKSSVLALVQRFYEPNSGRVLLDGRDLRKFNLRSLR--RAMALVPQEPFLFAATIHDNIA 620

Query: 514 FGRLSGSVPQQAEPVNVCDVFGFLSFVPENFKYLWYQREVQSDG 645
           +GR   +  +  E     +   F+S +PE +  L  +R VQ  G
Sbjct: 621 YGREGATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQLSG 664


>03_02_0069 +
           5401789-5401965,5403514-5403568,5403674-5405649,
           5405710-5405868,5406081-5406252,5406617-5406915,
           5407147-5407392
          Length = 1027

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 261 KYSSLDEPWGRWRDIVLMHKQPRNIF-VQPNTFHKGDAVELKR 136
           K+SS DE  GRWR +V + K P+  F    N   + +A  +KR
Sbjct: 15  KHSS-DEALGRWRRLVGVVKNPKRRFRFTANLDKRSEAAAMKR 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,584,441
Number of Sequences: 37544
Number of extensions: 389572
Number of successful extensions: 1209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)