Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17f12
(832 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical p... 180 1e-45
Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical pr... 180 1e-45
Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical pr... 180 1e-45
U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical ... 29 5.4
AC024214-11|AAF36073.2| 117|Caenorhabditis elegans Hypothetical... 28 7.1
>Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 180 bits (437), Expect = 1e-45
Identities = 97/247 (39%), Positives = 139/247 (56%), Gaps = 3/247 (1%)
Frame = -2
Query: 759 KSKNPLTDKGIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEILKIFGYEGQE 580
K K+ +T I +WY GET+ SKF L SA+EECRAEAVG L +IL+IFGY G
Sbjct: 501 KVKDIITGAPIATWYEPGETWSSKFGPLASAYEECRAEAVGYVLCCDADILEIFGYTGDL 560
Query: 579 AEDVTYVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIMRXXXXXXXXXXXXXXXE 400
A++V YVNWLS + G A E YQ K W QAH AR+V+ + +
Sbjct: 561 AQEVKYVNWLSEIRAGLL-ALEFYQAEQKKWGQAHCYARYVLTKVVLEAGQGFVKIEETK 619
Query: 399 --PGK-NLLLTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEKLFNKYSSLDEPWGR 229
GK +L L ++ + + G+ + FL KLQ K+TGDF G++LF Y + +
Sbjct: 620 GEDGKPDLHFKLDRNLIDSVGRPAVNTFLAKLQAYKSTGDFEGGKRLFESYGVVGDTELH 679
Query: 228 WRDIVLMHKQPRNIFVQPNTFHKGDAVELKRYPATAEGMVASWVDRFPNTKVDDILEKLA 49
WRDI + ++PR +FVQPNT K + L Y + G++ S+V+R+ + V+D L
Sbjct: 680 WRDICIARRKPRRLFVQPNTVEKNGEISLVTYSSDVSGVIQSFVERYEKSAVED-LYACW 738
Query: 48 KENSKYF 28
K++ K+F
Sbjct: 739 KDDQKWF 745
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 796 RNADGTFNFDKEKVK 752
+N DGTFNFD KVK
Sbjct: 489 KNLDGTFNFDTNKVK 503
>Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical protein
F02E9.9a protein.
Length = 707
Score = 180 bits (437), Expect = 1e-45
Identities = 97/247 (39%), Positives = 139/247 (56%), Gaps = 3/247 (1%)
Frame = -2
Query: 759 KSKNPLTDKGIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEILKIFGYEGQE 580
K K+ +T I +WY GET+ SKF L SA+EECRAEAVG L +IL+IFGY G
Sbjct: 463 KVKDIITGAPIATWYEPGETWSSKFGPLASAYEECRAEAVGYVLCCDADILEIFGYTGDL 522
Query: 579 AEDVTYVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIMRXXXXXXXXXXXXXXXE 400
A++V YVNWLS + G A E YQ K W QAH AR+V+ + +
Sbjct: 523 AQEVKYVNWLSEIRAGLL-ALEFYQAEQKKWGQAHCYARYVLTKVVLEAGQGFVKIEETK 581
Query: 399 --PGK-NLLLTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEKLFNKYSSLDEPWGR 229
GK +L L ++ + + G+ + FL KLQ K+TGDF G++LF Y + +
Sbjct: 582 GEDGKPDLHFKLDRNLIDSVGRPAVNTFLAKLQAYKSTGDFEGGKRLFESYGVVGDTELH 641
Query: 228 WRDIVLMHKQPRNIFVQPNTFHKGDAVELKRYPATAEGMVASWVDRFPNTKVDDILEKLA 49
WRDI + ++PR +FVQPNT K + L Y + G++ S+V+R+ + V+D L
Sbjct: 642 WRDICIARRKPRRLFVQPNTVEKNGEISLVTYSSDVSGVIQSFVERYEKSAVED-LYACW 700
Query: 48 KENSKYF 28
K++ K+F
Sbjct: 701 KDDQKWF 707
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 796 RNADGTFNFDKEKVK 752
+N DGTFNFD KVK
Sbjct: 451 KNLDGTFNFDTNKVK 465
>Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical protein
F02E9.9b protein.
Length = 745
Score = 180 bits (437), Expect = 1e-45
Identities = 97/247 (39%), Positives = 139/247 (56%), Gaps = 3/247 (1%)
Frame = -2
Query: 759 KSKNPLTDKGIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEILKIFGYEGQE 580
K K+ +T I +WY GET+ SKF L SA+EECRAEAVG L +IL+IFGY G
Sbjct: 501 KVKDIITGAPIATWYEPGETWSSKFGPLASAYEECRAEAVGYVLCCDADILEIFGYTGDL 560
Query: 579 AEDVTYVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIMRXXXXXXXXXXXXXXXE 400
A++V YVNWLS + G A E YQ K W QAH AR+V+ + +
Sbjct: 561 AQEVKYVNWLSEIRAGLL-ALEFYQAEQKKWGQAHCYARYVLTKVVLEAGQGFVKIEETK 619
Query: 399 --PGK-NLLLTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEKLFNKYSSLDEPWGR 229
GK +L L ++ + + G+ + FL KLQ K+TGDF G++LF Y + +
Sbjct: 620 GEDGKPDLHFKLDRNLIDSVGRPAVNTFLAKLQAYKSTGDFEGGKRLFESYGVVGDTELH 679
Query: 228 WRDIVLMHKQPRNIFVQPNTFHKGDAVELKRYPATAEGMVASWVDRFPNTKVDDILEKLA 49
WRDI + ++PR +FVQPNT K + L Y + G++ S+V+R+ + V+D L
Sbjct: 680 WRDICIARRKPRRLFVQPNTVEKNGEISLVTYSSDVSGVIQSFVERYEKSAVED-LYACW 738
Query: 48 KENSKYF 28
K++ K+F
Sbjct: 739 KDDQKWF 745
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 796 RNADGTFNFDKEKVK 752
+N DGTFNFD KVK
Sbjct: 489 KNLDGTFNFDTNKVK 503
>U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical
protein F55G1.6 protein.
Length = 350
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 472 GVRLQPSLSGGLVHFGRLSGSVPQQAEPVNVCDVFGFLSFVPENF 606
G +L+P L HFG L + +QA + C V F +F P NF
Sbjct: 134 GYKLKPCFCRKLFHFGCLRSLIEEQAS-CSECSVI-FSAFKPANF 176
>AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical
protein H34I24.2 protein.
Length = 458
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 593 TKDKKPKTSHTLTGSACCGTEPLRRPKCTNPP 498
T P + TGS C + L RP CTN P
Sbjct: 263 TTTPNPCLAFNCTGSGPCQLDSLNRPYCTNCP 294
>AC024214-11|AAF36073.2| 117|Caenorhabditis elegans Hypothetical
protein Y77E11A.3 protein.
Length = 117
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 388 SPVDATKGSSRYRRQEDHWRFLGETSNDKGN 296
S ++ K R+ R+E W FLG+ + GN
Sbjct: 16 SEKNSEKAHKRFSREEHEWSFLGQQQFNAGN 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,406,698
Number of Sequences: 27780
Number of extensions: 323595
Number of successful extensions: 1078
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -