Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f12
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.86 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   4.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 114 MVASWVDRFPNTKVDDILEKLAKENSKYF 28
           ++ S++D F N     ++EK+ KEN K F
Sbjct: 149 VLKSFIDLF-NANARSVVEKMRKENGKEF 176


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -2

Query: 750 NPLTDKGIESWYSEGETYDSKFTTLGSAFEECRA--EAVGLYLSLVPEILKIFGYEGQEA 577
           NP   +   + + + E+    F      F   R   +A G+Y S    +  IFGY+G   
Sbjct: 231 NPFDYEKRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYGSNSSTVGTIFGYQG--- 287

Query: 576 EDVTYVN 556
              TYVN
Sbjct: 288 ---TYVN 291


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 816 AAKLXATEMQMERSILIKKKSKNPLTDKGIESWYSEGETY 697
           A K+ A E      I +    + PLT++ +E      ETY
Sbjct: 138 AVKVLANEFLSILPIFLYALGEQPLTEQNLEELRDLKETY 177


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 816 AAKLXATEMQMERSILIKKKSKNPLTDKGIESWYSEGETY 697
           A K+ A E      I +    + PLT++ +E      ETY
Sbjct: 176 AVKVLANEFLSILPIFLYALGEQPLTEQNLEELRDLKETY 215


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = -3

Query: 629 SLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPL 525
           + W +   K  G  D  P T   +  S   G E L
Sbjct: 575 AFWNEFLPKLKGIPDPXPNTCKVIASSVSAGEEGL 609


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = -3

Query: 584 KKPKTSHTLTGSACCGTEPLRRPKCTNPPLRLGCRRTPAHVS 459
           K P   H       C   P + P       R   RRTP + S
Sbjct: 378 KNPAMGHWQMSCVACSPPPRQTPPSRKESGRRRRRRTPRYNS 419


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 335 MIFLPSVARRSFCSVNRRFFP 397
           +++ P    +S CS++  FFP
Sbjct: 141 VVWQPPAVYKSSCSIDVEFFP 161


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +2

Query: 335 MIFLPSVARRSFCSVNRRFFP 397
           +++ P    +SFC ++  +FP
Sbjct: 133 VVWKPPAIYKSFCEIDVEYFP 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,118
Number of Sequences: 438
Number of extensions: 4113
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)