Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17f11
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   2.5  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   4.4  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    26   7.8  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 707 PSTHISVTRVSPGITG-FTKRAFKAFTLLESFPPNLARTCL 826
           P+T +S+T    G T   T++A  AF   ESFPPNL +  +
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAF---ESFPPNLQKALM 415


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 139 LLFSVIRMLLNKTDMKRYVNCDKCYFF 59
           LL  + R+LLN TD +   N  +C+ F
Sbjct: 140 LLHGIYRILLNPTDKESLENAARCFDF 166


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 650 VHTLISRMWYQLVGPHLQQH 591
           V T IS  W+ ++ PH+Q H
Sbjct: 58  VLTKISEFWFDVLKPHVQTH 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,134
Number of Sequences: 5004
Number of extensions: 78218
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)