Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e24
         (790 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24774-1|AAA35485.1|  266|Homo sapiens delta3, delta2-enoyl-CoA ...    50   1e-05
AL353809-5|CAH72552.1| 3477|Homo sapiens asp (abnormal spindle) ...    31   4.7  
AK001379-1|BAA91660.1|  285|Homo sapiens protein ( Homo sapiens ...    31   4.7  

>L24774-1|AAA35485.1|  266|Homo sapiens delta3, delta2-enoyl-CoA
           isomerase protein.
          Length = 266

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = -2

Query: 765 SPQLGM-FNTDEALKVGLIDVLATDKADAVXXXXXXXXXXXXISPIARALTKQKIRAEPL 589
           +P+LG+ F   EAL+VG++D +  ++                I   AR LTK  +R    
Sbjct: 169 APELGLLFRRPEALQVGIVDQVVPEE-QVQSTALSAIAQWMAIPDHARQLTKAMMRKATA 227

Query: 588 TWLIKNRKQDTDEFLTFVQNPKVQQSLELYIQALKQK 478
           + L+  R  D   F++F+    +Q+SL++Y++ LK++
Sbjct: 228 SRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 264


>AL353809-5|CAH72552.1| 3477|Homo sapiens asp (abnormal spindle)
            homolog, microcephaly associated (Drosophila) protein.
          Length = 3477

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 609  KIRAEPLTWLIKNRKQDTDEFLTFVQNPKVQQSLELYIQALKQKS 475
            KI++    W+I+ R ++     TF+Q+      L +  QALKQ S
Sbjct: 2317 KIQSSYRRWMIRKRMREMHRAATFIQSTFRMHRLHMRYQALKQAS 2361


>AK001379-1|BAA91660.1|  285|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10517 fis, clone NT2RP2000812. ).
          Length = 285

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 609 KIRAEPLTWLIKNRKQDTDEFLTFVQNPKVQQSLELYIQALKQKS 475
           KI++    W+I+ R ++     TF+Q+      L +  QALKQ S
Sbjct: 92  KIQSSYRRWMIRKRMREMHRAATFIQSTFRMHRLHMRYQALKQAS 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,906,675
Number of Sequences: 237096
Number of extensions: 1744370
Number of successful extensions: 2259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)