Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e24
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    31   1.2  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    31   1.2  
AF125459-14|AAD12843.1|  297|Caenorhabditis elegans Hypothetical...    29   5.0  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 101  LSC-GINVPFQRHTMVT*GHLQSQCYISCLVSLLL*SYIHFYIYDNYYNTNSKYLLNQHH 277
            L+C G N+ FQ +     GH  S   I+C V  LL   +   + D Y++ +SK ++++  
Sbjct: 4012 LTCEGHNLEFQNYLRTQPGHTTSVNLINCTVDYLL--RLQESVMDFYWHYSSKEVIDEGG 4069

Query: 278  R*YIL 292
            + Y L
Sbjct: 4070 KEYFL 4074


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 101  LSC-GINVPFQRHTMVT*GHLQSQCYISCLVSLLL*SYIHFYIYDNYYNTNSKYLLNQHH 277
            L+C G N+ FQ +     GH  S   I+C V  LL   +   + D Y++ +SK ++++  
Sbjct: 4004 LTCEGHNLEFQNYLRTQPGHTTSVNLINCTVDYLL--RLQESVMDFYWHYSSKEVIDEGG 4061

Query: 278  R*YIL 292
            + Y L
Sbjct: 4062 KEYFL 4066


>AF125459-14|AAD12843.1|  297|Caenorhabditis elegans Hypothetical
           protein Y25C1A.13 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = -2

Query: 747 FNTDEALKVGLIDVLATDKADAVXXXXXXXXXXXXISPIARALTKQKIRAEPLTWLIKNR 568
           F  DEAL+ GLI  +  D+   +             SPIA   TK+ +           R
Sbjct: 204 FGADEALRFGLISRIYDDRQSLLENSIDMAARIAEKSPIAVQGTKETLNYA--------R 255

Query: 567 KQDTDEFLTFVQNPKVQQSL 508
           +  TD+ L F++   + Q L
Sbjct: 256 EHSTDDSLNFIKTWNMSQLL 275


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
           protein C41A3.1 protein.
          Length = 7829

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 141 WLLEVIYKVNATFHAWCLYYC 203
           WLL ++Y+ N TFH+    YC
Sbjct: 501 WLLRMLYEKNETFHSTVDKYC 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,222,070
Number of Sequences: 27780
Number of extensions: 321461
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)