Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e22
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         29   0.78 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.3  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 320 IQVSIYNSQHFNIHKFFKSSDLLTVPLFDCLSNVGSRMTNNFR*QMKKNLIALNFSRSLN 499
           + V   N++H  +H   K + LLT+     +S      +N     +   L   NFS+SL 
Sbjct: 1   MDVDFANAKH-KLHCLLKKNFLLTIRFSSLVSIQYIPFSNRLYEIISIALNPCNFSKSLF 59

Query: 500 WYSTNIRSNIFYK 538
           W    I++++  K
Sbjct: 60  WLRKKIKNSVLLK 72


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 567 IVFN*HCKFCL*NIFDRIFVLYQFKEREKFNAI 469
           ++F+  C FC+ NIF + F+++Q      F  I
Sbjct: 5   LLFSLICVFCISNIFTQAFLVHQIYGNSSFTKI 37


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 289 FLTVFFFNYCICFHKAGYIHAFET 218
           F   FFF++C  FH A +IH +++
Sbjct: 79  FFFFFFFSHCRRFHIAIFIHPYDS 102


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 462  FFICHLKLFVILEPTLL 412
            FF+CHL LF++L P LL
Sbjct: 1779 FFLCHLLLFLML-PVLL 1794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,572
Number of Sequences: 5004
Number of extensions: 44152
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)