Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e22
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   5.7  
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396...    27   9.9  

>09_02_0048 -
           3532663-3533475,3534086-3534589,3534715-3535740,
           3536083-3536226,3536974-3537375,3537499-3537721,
           3537830-3542368,3542480-3542599,3543005-3543038,
           3543922-3544102,3544198-3544815,3545022-3551098,
           3551139-3551304,3551508-3551614,3552056-3552178,
           3553417-3553642
          Length = 5100

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -1

Query: 444 KLFVILEPTLLKQSNNGTVKRSLDLKNLCILKCCELYIET*M*DSISFHNIT 289
           K+FV     LL+++N+ +   SLDL N C +  C  ++E  +   ++FH+ T
Sbjct: 720 KVFVQYVGYLLEKANDKS-SSSLDLNNFCRILPCAFHLEILL---VAFHSTT 767


>03_01_0527 +
           3960982-3961290,3961371-3961464,3961898-3962084,
           3962194-3962449,3962561-3962773,3962856-3962942,
           3963089-3963223,3963296-3963409,3963507-3963754,
           3963824-3963904,3963979-3964210,3964340-3964438,
           3964513-3964701,3964928-3965023
          Length = 779

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 605 RPPMMTSDLINIS*SLTNIVNFAYKIYSIVYLY 507
           +PPM   DL NIS S  N+   A K   ++Y+Y
Sbjct: 309 QPPMNLPDLKNISSSSINVKVVAKKKRPLIYVY 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,001
Number of Sequences: 37544
Number of extensions: 212474
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)