Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e22
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF106573-8|ABC48249.1|  309|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral signa...    27   8.9  

>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 364 LMYIEMLRIIYRNLNVRFYFIS*YNFLTVFFFNYCICFHKAGYIHAFET 218
           L  I M  IIY  LN        +N   +FFF +C CF ++  +   +T
Sbjct: 35  LSVISMGSIIYFFLNYSNLLAFHFNIKILFFFQFCSCFLQSATLAISQT 83


>AF106573-8|ABC48249.1|  309|Caenorhabditis elegans Hypothetical
           protein F52D2.8b protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = -1

Query: 549 CKFCL*NIFDRIFVLYQFKEREKFNAIKFFF-------ICHLKLFVILEPTLLKQSNNGT 391
           C+F   + F+RI  L Q++  + F     +F       + H + F I E  +L  +    
Sbjct: 180 CRFGSLDQFERIIYLDQWRNAKTFKFENSYFCSKLLVHLFHFQCFYINE--MLDFTTQVA 237

Query: 390 VKRSLDLKNLCILKCCELYIE 328
           VK   DL      +CC++Y E
Sbjct: 238 VKIRDDLMRRSTFQCCQIYFE 258


>AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral
           signaling target protein 2 protein.
          Length = 661

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 353 NIHKFFKSSDLLTVPLFDCLSNVGSRMTNNFR*QMKKNL 469
           N+   F+SS+ L   LF C++ V  ++  N+  +++K L
Sbjct: 477 NLRSRFRSSEDLVHRLFVCIAGVADQLQTNYSSEIRKVL 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,527,157
Number of Sequences: 27780
Number of extensions: 234553
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)