Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e21
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   7.2  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   7.2  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   9.5  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 167 FNPEDGLCVHVNSYKCNIKSSDQTDLYTEEVFKDSRNFTFKRGLQN 30
           F P     +  NS KC++ +S +  L   E F    NF  K  + N
Sbjct: 457 FEPRQKFPIDTNSSKCDMSASTEMHLKDTEKF---ANFKLKENILN 499


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 497 LCESVSQTSLCTARGRYPNNDVE-DCRGYTMCLMGGANNFTQYRLTCPIGFV 345
           LC  + +T     RG  P+      CR  T+    G ++F+QY +   I  V
Sbjct: 112 LCSKIRETQ---GRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLV 160


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 224 EAINGLATARLIECPMNTVFNPED 153
           E  NGL   ++IE P++T  N +D
Sbjct: 511 ENANGLTDEKIIEAPLDTKENSDD 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,001
Number of Sequences: 5004
Number of extensions: 62579
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)