Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e21
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0098 - 12341741-12341769,12342530-12342927,12343843-123438...    31   0.60 
01_05_0179 + 18973795-18973992,18974087-18974276,18974374-189745...    28   7.4  
01_01_0179 + 1517379-1517721,1518092-1518376,1519462-1519699,151...    28   7.4  
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117...    27   9.8  

>09_03_0098 -
           12341741-12341769,12342530-12342927,12343843-12343889,
           12344916-12345244,12345523-12345601
          Length = 293

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
 Frame = -1

Query: 419 GYTMCLMGGANNFTQYRLTCPIGFVYSH--KEQQCTNVTSYSCHESYNCTSRG--YFASE 252
           G  +C + G ++ +   L CP  ++Y H   E         SC    +  +     + S 
Sbjct: 49  GKKLCYICGDDDGSHEELRCPFNYMYYHMSDEDASAGTCEGSCSAGKHPMAEAVVVYGSG 108

Query: 251 SCTSYIACVEAINGLATARLIECPMNTVFNPEDGLC 144
            C  ++ CV  +N   T      P+      +D +C
Sbjct: 109 RCREFLRCVVRVNNFPTKLRPWDPLLEKLERKDCIC 144


>01_05_0179 +
           18973795-18973992,18974087-18974276,18974374-18974504,
           18974948-18975053,18975661-18975727,18976632-18976698,
           18977858-18977947
          Length = 282

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 188 ECPMNTVFNPEDGLCVHVNSYKCNIKSSDQTDLYTEE 78
           + P+N +F     +C+ VNS+K + ++ ++T L   E
Sbjct: 175 QTPLNGIFEKATRVCISVNSHKISGENENRTFLSDNE 211


>01_01_0179 +
           1517379-1517721,1518092-1518376,1519462-1519699,
           1519796-1519946,1520049-1520446,1520552-1520573
          Length = 478

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 158 EDGLCVHVNSYKCNIKSSDQTDLYTEEVFKDSRNFTFKR 42
           E  LCV +    C    SD+ D+YT  +   S +FT  +
Sbjct: 364 EARLCVQLGLLCCQAVVSDRPDMYTVHLMLSSDSFTLPK 402


>03_05_0898 +
           28610123-28610203,28611190-28611271,28611666-28611721,
           28612253-28612366,28612484-28612546,28612633-28612752,
           28612850-28612950,28613097-28613156,28613243-28613342,
           28613421-28613575,28613661-28613756,28614269-28614403,
           28614510-28614573,28614648-28614729,28615038-28615213,
           28615302-28615378,28615637-28615769,28615939-28616055,
           28616394-28616398,28616564-28616684,28616711-28617751
          Length = 992

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 260 RSNPYSCNCKIRGKSNW*HLCIVAL 334
           R  P +C+C++ GK N    CIV L
Sbjct: 747 RELPSTCSCRLSGKPNGSESCIVLL 771


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,028
Number of Sequences: 37544
Number of extensions: 371677
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)