Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e19
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    87   3e-18
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   2.3  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   3.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   7.1  

>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
 Frame = -2

Query: 711 TFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKPGNA- 535
           ++ K QP S +FLDIT+ +AVLEN LRNFS LT  D+  I YN +VY++ V++ +P ++ 
Sbjct: 133 SYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSR 192

Query: 534 --VIIIECDMNVEFAPPVGYKEQ-DHVSRSNDGAVEG--MDEDPAAMMPESSGFRAFSGE 370
             V ++E D+ V+F PP+GY+E      + N   V+G  + +     +          G 
Sbjct: 193 HVVSVVETDLVVDFDPPIGYEESLQKNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGT 252

Query: 369 GNRLDGKK 346
           G +L+GK+
Sbjct: 253 GTKLNGKE 260



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 793 LPHWMMANLVLEEGALIQI 737
           LP+WMM  L LE G L+++
Sbjct: 106 LPYWMMTTLSLEPGDLVRV 124


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 381 FSGEGNRLDGKKKKLISESDSEPGTSQPRQSYV 283
           FS E  + DGK +  +SES S  GTS    S V
Sbjct: 3   FSAEQAKKDGKDQSPVSESSSVGGTSPATASSV 35


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 336 ISESDSEPGTSQPRQSYVRGIPDYDFVIGTLRFIRN 229
           IS S S+P +S P  S +   PD DF      F+++
Sbjct: 137 ISSSSSDPSSSPPPSSSLLKTPDNDFCARPETFVKS 172


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/64 (28%), Positives = 23/64 (35%)
 Frame = -2

Query: 480 KEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQ 301
           ++ D  S S+D   E   ED  +    S      S EG+          SES SE   S 
Sbjct: 124 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 183

Query: 300 PRQS 289
              S
Sbjct: 184 SSSS 187



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/64 (28%), Positives = 23/64 (35%)
 Frame = -2

Query: 480 KEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQ 301
           ++ D  S S+D   E   ED  +    S      S EG+          SES SE   S 
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 237

Query: 300 PRQS 289
              S
Sbjct: 238 SSSS 241


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 345 KKLISESDSEPGTSQPRQ 292
           K+L+ E+DSEPGT  PRQ
Sbjct: 7   KQLVPENDSEPGT--PRQ 22


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 714 ATFSKFQPLSEDFLDITNPKAVL 646
           A  SK  P SEDF+DIT P  +L
Sbjct: 491 ANSSKPIPDSEDFMDITRPFNIL 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,964
Number of Sequences: 5004
Number of extensions: 69778
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)