Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e19
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0882 + 29061504-29061512,29061852-29061964,29062371-290623... 138 4e-33
02_01_0610 + 4564016-4564018,4564166-4564243,4564764-4564788,456... 134 1e-31
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 133 2e-31
01_01_0293 - 2399945-2400395,2400927-2401057,2401184-2401305,240... 82 6e-16
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667 69 3e-12
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 29 5.6
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 29 5.6
06_03_0208 - 17941468-17941507,17942073-17942148,17943442-179435... 29 5.6
03_05_1147 - 30744180-30744350,30744439-30744924 28 7.4
01_01_0051 + 389051-389623 28 7.4
08_02_0236 + 14652034-14652225,14652311-14652527,14652561-146532... 28 9.8
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 9.8
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510... 28 9.8
>04_04_0882 +
29061504-29061512,29061852-29061964,29062371-29062398,
29062690-29062734,29063379-29063456,29063573-29063597,
29063690-29063722,29063793-29063914,29064015-29064145,
29064242-29064468,29065175-29065431,29065859-29065945
Length = 384
Score = 138 bits (335), Expect = 4e-33
Identities = 68/154 (44%), Positives = 94/154 (61%)
Frame = -2
Query: 741 KFESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELC 562
+ ++ +LP T+ K QP + DFLDI+NPKA+LE LR SC+TTGD I + YN+K Y +
Sbjct: 165 RVKNTTLPKGTYVKLQPHTTDFLDISNPKAILEKTLRKLSCITTGDSIMVAYNNKQYYID 224
Query: 561 VLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRA 382
++ETKP +AV IIE D V+FAPP+ YKE ++ + + A E ED A + + F+
Sbjct: 225 IVETKPASAVSIIETDCEVDFAPPLDYKEPENPQQPSVPASEATAEDENAKVEDELKFKP 284
Query: 381 FSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVR 280
F+G G RLDGK KL + S P S R
Sbjct: 285 FTGSGKRLDGKASKLQATEVPSASRSSPSDSNKR 318
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -1
Query: 793 LPHWMMANLVLEEGALIQI 737
+P+WMM N++L+EG +++
Sbjct: 148 MPYWMMQNMLLQEGDTVRV 166
>02_01_0610 +
4564016-4564018,4564166-4564243,4564764-4564788,
4564870-4564902,4565034-4565155,4565230-4565360,
4565509-4565732,4565824-4566065,4566268-4566357
Length = 315
Score = 134 bits (323), Expect = 1e-31
Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 19/215 (8%)
Frame = -2
Query: 735 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 556
++ +LP T+ K QP + DFLDI+NPKA+LE LRN+SCLTTGD I + YN+K Y + ++
Sbjct: 103 KNANLPKGTYVKLQPHTTDFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNKKYYIDIV 162
Query: 555 ETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFS 376
ETKP NA+ IIE D V+FAPP+ YKE + + + E+ A P+ F F+
Sbjct: 163 ETKPSNAISIIETDCEVDFAPPLDYKEPERQKAAVPPSTAPTAEEAAEEEPK---FIPFT 219
Query: 375 GEGNRLDGK--KKKLISESDS-----------EPGTSQPRQSYVRGIPDYDFVIGT--LR 241
G G RLDGK K K +S S +P T+ QS V G R
Sbjct: 220 GPGRRLDGKAPKDKDVSASSPAKRQANATNSVQPSTASTSQSSSSRKTTEKLVFGPGGNR 279
Query: 240 FIRNSR--PAKDPKEE-AQTEP-FQAFTGEGFTLR 148
+ + P K+PKE+ + EP F AFTG ++L+
Sbjct: 280 TSKETEKVPEKEPKEDPKKDEPKFSAFTGRKYSLK 314
>09_04_0593 - 18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 133 bits (321), Expect = 2e-31
Identities = 66/144 (45%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Frame = -2
Query: 732 SVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLE 553
S SLP +++K QP + DFLD NPKAVLE LR+F+CLTTGD I + YN+K + + ++E
Sbjct: 583 SASLPKGSYAKLQPHTGDFLDTANPKAVLEKTLRSFTCLTTGDTIMVAYNNKEFLIDIVE 642
Query: 552 TKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSG 373
TKP +AV IIE D V+FAPP+ YKE + V + + + + FRAF+G
Sbjct: 643 TKPASAVCIIETDCEVDFAPPLDYKEPEKVQQKPSVPSSKAASEDQDQIKDEPEFRAFTG 702
Query: 372 EGNRLDGK-KKKLISESDSEPGTS 304
GNRLDGK K L + S P +
Sbjct: 703 SGNRLDGKASKPLAAGISSNPAAA 726
>01_01_0293 -
2399945-2400395,2400927-2401057,2401184-2401305,
2401423-2401455,2401556-2401661,2401882-2401884
Length = 281
Score = 81.8 bits (193), Expect = 6e-16
Identities = 47/132 (35%), Positives = 71/132 (53%)
Frame = -2
Query: 732 SVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLE 553
S S+P ATF K QP + DF ++ P+ +LE RN+ CLTTG+ IA+ + Y L V+E
Sbjct: 105 STSIPKATFIKLQPHTSDFHKLSEPRYLLEYNFRNYFCLTTGETIAVAAGDRFYYLDVVE 164
Query: 552 TKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSG 373
T+P +AV +IE D VEF + E + V + +PA +GFR
Sbjct: 165 TRPADAVCVIETDCEVEFDQALDQAEPAAAAAMQVDGVGAGEPEPARF----TGFR-MRM 219
Query: 372 EGNRLDGKKKKL 337
+G ++ +KK +
Sbjct: 220 DGKPVEEEKKTM 231
>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
Length = 569
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/80 (40%), Positives = 48/80 (60%)
Frame = -2
Query: 729 VSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLET 550
VSLP T++K +P F D+ N +AVLE LRN + L+ D + + Y Y+L VLE
Sbjct: 179 VSLPKGTYAKLKPEGVGFSDLPNHRAVLETALRNHATLSENDFVVVNYGQLQYKLKVLEL 238
Query: 549 KPGNAVIIIECDMNVEFAPP 490
KP ++V ++E D+ V+ P
Sbjct: 239 KPASSVSVLETDVEVDIEGP 258
>12_02_0611 +
21118777-21119066,21119501-21119594,21119742-21120182,
21120267-21120866
Length = 474
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -2
Query: 486 GYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGT 307
G + V G+VEG DED + G G + DGK+KK + +S GT
Sbjct: 272 GAVREAEVDHDGTGSVEGGDEDDDNADDLDDDYP--PGMGGKKDGKEKKDSPKKESPKGT 329
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 636 LRNFSCLTTGDVIAIKYNSKV--YELCVLETKPGNAVIIIECDMNV 505
L+NFSC + DVI+ Y SK+ E+ + A+I IE +++
Sbjct: 1149 LQNFSCFPSDDVISSGYGSKIENIEMSSSGKRTEYAIICIELALSL 1194
>06_03_0208 -
17941468-17941507,17942073-17942148,17943442-17943514,
17944023-17944106,17945335-17945481,17945839-17945863,
17945966-17946420
Length = 299
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 450 DGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDG-KKKKLISESDSEPGTSQPRQSYVRGI 274
D V+G DE+ A PE R +GE +DG ++ L+ S P + R R
Sbjct: 104 DVLVDGEDEEDARS-PEFMALRVVAGEDRAVDGLHRRPLLPPPASHPALREGRAFRSRFT 162
Query: 273 PDYD 262
P D
Sbjct: 163 PAID 166
>03_05_1147 - 30744180-30744350,30744439-30744924
Length = 218
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 432 MDEDPAAMMP----ESSGFRAFSGEGNRLDGKKKKLISESDSEP 313
MD+ PA +P ++ A +G G +L G +KL + SEP
Sbjct: 68 MDKKPAKNLPVPPAAAAAAAAKNGSGGKLPGLSRKLFQKGSSEP 111
>01_01_0051 + 389051-389623
Length = 190
Score = 28.3 bits (60), Expect = 7.4
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Frame = -2
Query: 435 GMDEDPAAMMPESSGF-------RAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRG 277
G DED A PE+ R+ G + S S SE +S S
Sbjct: 70 GEDEDNNATPPEAPAASSLKDRQRSSHGTDTSSSSESSSSSSSSSSESSSSSSSSSSESS 129
Query: 276 IPDYDFVIGTLRFIRNSRPAKDPKEEAQTEPFQAFTGEGFTLRTAKSKN*NWFSVS 109
D + R RN P K+EA+ P + T ++ S +W++ S
Sbjct: 130 SSSSDDDLARRRQQRNPSPPPQYKKEARRSPSPSPPSSSSTSSSSSSSGSSWWTRS 185
>08_02_0236 +
14652034-14652225,14652311-14652527,14652561-14653208,
14653374-14654364,14654532-14654703
Length = 739
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = -2
Query: 285 VRGIPDYDFVIGTLRFIRNSRPAKDPKEEAQTEPFQAFTGEGF--TLRT----AKSKN*N 124
+ +P ++ L + PAKDP+ + T P +A T LR+ +K KN
Sbjct: 534 IEEVPGLEWDGTDLEIFEDPSPAKDPEVQETTVPEKATTSSEVPRVLRSHDSKSKDKNKE 593
Query: 123 WFSVSVHRG 97
F V+V RG
Sbjct: 594 KFMVTVFRG 602
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = -2
Query: 504 EFAPPVGYKEQDHVS--RSNDGAVE-GMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLI 334
E AP K++ S +SN VE G P + S R DG KK
Sbjct: 123 EIAPERQRKDKSDKSGRKSNKDEVEPGEVAPPDKKQDRDHNKKLGSSAQVRDDGSKKGSS 182
Query: 333 SESDSEPGTSQPRQS 289
+SD EPG +P S
Sbjct: 183 RDSDEEPGEIRPESS 197
>04_04_0838 -
28550036-28550237,28550595-28550676,28550972-28551011,
28551342-28551416,28551448-28551543,28551710-28551805,
28551897-28551974,28552064-28552170,28552450-28552477,
28552777-28552898,28554106-28554172,28554336-28554508,
28554763-28554846,28555616-28555733,28556093-28556164,
28557026-28557118,28557484-28557636,28558000-28558086,
28559436-28559528,28560416-28560643,28561106-28561207,
28561390-28561596,28561798-28561846,28562385-28562537,
28562649-28562712,28562905-28563175,28564008-28564072,
28564184-28564337
Length = 1052
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 779 DGKSCSRRRSFNTNLKVYHYL*QHSLSSNLYQKI 678
+ K C + FN + YH++ + L+ LY+K+
Sbjct: 273 NAKLCEAPKKFNLKGETYHWIQSYHLNFRLYEKL 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,117,220
Number of Sequences: 37544
Number of extensions: 436592
Number of successful extensions: 1111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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