Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e19
(793 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060735-1|AAL28283.1| 316|Drosophila melanogaster GH18603p pro... 209 3e-54
AF228283-1|AAK00731.1| 316|Drosophila melanogaster ubiquitin fu... 209 3e-54
AF228282-1|AAK00730.1| 316|Drosophila melanogaster ubiquitin fu... 209 3e-54
AE014296-1911|AAF50090.1| 316|Drosophila melanogaster CG6233-PA... 209 3e-54
BT029922-1|ABM92796.1| 348|Drosophila melanogaster IP05277p pro... 29 7.3
AE014296-889|AAN11613.1| 328|Drosophila melanogaster CG32234-PA... 29 7.3
>AY060735-1|AAL28283.1| 316|Drosophila melanogaster GH18603p
protein.
Length = 316
Score = 209 bits (511), Expect = 3e-54
Identities = 115/211 (54%), Positives = 131/211 (62%), Gaps = 12/211 (5%)
Frame = -2
Query: 735 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 556
ESVSLPVATFSKFQP S DFLDITNPKAVLEN LRNF+CLT GDVIAIKYN KVYELCVL
Sbjct: 110 ESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVL 169
Query: 555 ETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDG-----AVEGMDEDPAAMMPESSG 391
ETKPGNAV IIECDMNVEF PVGYK+ S G G + A
Sbjct: 170 ETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEV 229
Query: 390 FRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDFVIGTLRFIRNSRPAKD 211
F G G RLDGKKKK +S+ T ++ RG+PDYDF G +RF RN RP D
Sbjct: 230 VETFKGSGVRLDGKKKK-----ESQLETPVVKKVLARGVPDYDFQFGLIRFDRNIRPISD 284
Query: 210 PKEE-------AQTEPFQAFTGEGFTLRTAK 139
+E A ++F G GF+++ +
Sbjct: 285 RSQEDDAVAGNADASDAESFHGTGFSMKKTR 315
Score = 31.9 bits (69), Expect = 1.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 793 LPHWMMANLVLEEGALIQI 737
LPHWMM NL+L EG ++ I
Sbjct: 91 LPHWMMENLLLGEGDILNI 109
>AF228283-1|AAK00731.1| 316|Drosophila melanogaster ubiquitin
fusion-degradation 1-like protein protein.
Length = 316
Score = 209 bits (511), Expect = 3e-54
Identities = 115/211 (54%), Positives = 131/211 (62%), Gaps = 12/211 (5%)
Frame = -2
Query: 735 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 556
ESVSLPVATFSKFQP S DFLDITNPKAVLEN LRNF+CLT GDVIAIKYN KVYELCVL
Sbjct: 110 ESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVL 169
Query: 555 ETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDG-----AVEGMDEDPAAMMPESSG 391
ETKPGNAV IIECDMNVEF PVGYK+ S G G + A
Sbjct: 170 ETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEV 229
Query: 390 FRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDFVIGTLRFIRNSRPAKD 211
F G G RLDGKKKK +S+ T ++ RG+PDYDF G +RF RN RP D
Sbjct: 230 VETFKGSGVRLDGKKKK-----ESQLETPVVKKVLARGVPDYDFQFGLIRFDRNIRPISD 284
Query: 210 PKEE-------AQTEPFQAFTGEGFTLRTAK 139
+E A ++F G GF+++ +
Sbjct: 285 RSQEDDAVAGNADASDAESFHGTGFSMKKTR 315
Score = 31.9 bits (69), Expect = 1.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 793 LPHWMMANLVLEEGALIQI 737
LPHWMM NL+L EG ++ I
Sbjct: 91 LPHWMMENLLLGEGDILNI 109
>AF228282-1|AAK00730.1| 316|Drosophila melanogaster ubiquitin
fusion-degradation 1-like protein protein.
Length = 316
Score = 209 bits (511), Expect = 3e-54
Identities = 115/211 (54%), Positives = 131/211 (62%), Gaps = 12/211 (5%)
Frame = -2
Query: 735 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 556
ESVSLPVATFSKFQP S DFLDITNPKAVLEN LRNF+CLT GDVIAIKYN KVYELCVL
Sbjct: 110 ESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVL 169
Query: 555 ETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDG-----AVEGMDEDPAAMMPESSG 391
ETKPGNAV IIECDMNVEF PVGYK+ S G G + A
Sbjct: 170 ETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEV 229
Query: 390 FRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDFVIGTLRFIRNSRPAKD 211
F G G RLDGKKKK +S+ T ++ RG+PDYDF G +RF RN RP D
Sbjct: 230 VETFKGSGVRLDGKKKK-----ESQLETPVVKKVLARGVPDYDFQFGLIRFDRNIRPISD 284
Query: 210 PKEE-------AQTEPFQAFTGEGFTLRTAK 139
+E A ++F G GF+++ +
Sbjct: 285 RSQEDDAVAGNADASDAESFHGTGFSMKKTR 315
Score = 31.9 bits (69), Expect = 1.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 793 LPHWMMANLVLEEGALIQI 737
LPHWMM NL+L EG ++ I
Sbjct: 91 LPHWMMENLLLGEGDILNI 109
>AE014296-1911|AAF50090.1| 316|Drosophila melanogaster CG6233-PA
protein.
Length = 316
Score = 209 bits (511), Expect = 3e-54
Identities = 115/211 (54%), Positives = 131/211 (62%), Gaps = 12/211 (5%)
Frame = -2
Query: 735 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 556
ESVSLPVATFSKFQP S DFLDITNPKAVLEN LRNF+CLT GDVIAIKYN KVYELCVL
Sbjct: 110 ESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVL 169
Query: 555 ETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDG-----AVEGMDEDPAAMMPESSG 391
ETKPGNAV IIECDMNVEF PVGYK+ S G G + A
Sbjct: 170 ETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEV 229
Query: 390 FRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDFVIGTLRFIRNSRPAKD 211
F G G RLDGKKKK +S+ T ++ RG+PDYDF G +RF RN RP D
Sbjct: 230 VETFKGSGVRLDGKKKK-----ESQLETPVVKKVLARGVPDYDFQFGLIRFDRNIRPISD 284
Query: 210 PKEE-------AQTEPFQAFTGEGFTLRTAK 139
+E A ++F G GF+++ +
Sbjct: 285 RSQEDDAVAGNADASDAESFHGTGFSMKKTR 315
Score = 31.9 bits (69), Expect = 1.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 793 LPHWMMANLVLEEGALIQI 737
LPHWMM NL+L EG ++ I
Sbjct: 91 LPHWMMENLLLGEGDILNI 109
>BT029922-1|ABM92796.1| 348|Drosophila melanogaster IP05277p
protein.
Length = 348
Score = 29.1 bits (62), Expect = 7.3
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = -2
Query: 534 VIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRA------FSG 373
VII+ C + + + YK++ + R D + E A M ES G +A +G
Sbjct: 128 VIIVICCLLEVYRSHLAYKKR--IERETDEDIIWSKEQ-ATKMHESPGVKAGLLGGVTAG 184
Query: 372 EGNRLDGKKKKLISESDSEPGTSQP 298
GN L K + + D +PG P
Sbjct: 185 SGNGLPPYTYKALPQEDKKPGNGAP 209
>AE014296-889|AAN11613.1| 328|Drosophila melanogaster CG32234-PA
protein.
Length = 328
Score = 29.1 bits (62), Expect = 7.3
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = -2
Query: 534 VIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRA------FSG 373
VII+ C + + + YK++ + R D + E A M ES G +A +G
Sbjct: 93 VIIVICCLLEVYRSHLAYKKR--IERETDEDIIWSKEQ-ATKMHESPGVKAGLLGGVTAG 149
Query: 372 EGNRLDGKKKKLISESDSEPGTSQP 298
GN L K + + D +PG P
Sbjct: 150 SGNGLPPYTYKALPQEDKKPGNGAP 174
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,720,691
Number of Sequences: 53049
Number of extensions: 754188
Number of successful extensions: 1832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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