Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e19
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-4|CAB54216.1|  336|Caenorhabditis elegans Hypothetical pr...   111   7e-25
Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical pr...   111   7e-25
AC025715-11|AAP13753.1|  516|Caenorhabditis elegans Hypothetical...    29   5.0  
AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical...    29   5.0  
U88311-3|AAB42345.1|  526|Caenorhabditis elegans Udp-glucuronosy...    28   6.7  
AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    28   8.8  

>Z69635-4|CAB54216.1|  336|Caenorhabditis elegans Hypothetical
           protein F19B6.2b protein.
          Length = 336

 Score =  111 bits (266), Expect = 7e-25
 Identities = 68/155 (43%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
 Frame = -2

Query: 741 KFESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELC 562
           + ES +LP ATF+K +P+S +FL+ITNPKAVLE  LR ++CLT  D I   Y  +  E  
Sbjct: 109 RIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFL 168

Query: 561 VLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRA 382
           V++ KP N+V IIECD+N++F PP GY EQ    R    AV      P A     +G +A
Sbjct: 169 VVDLKPANSVCIIECDVNLDFDPPEGYVEQ---PRQVTPAVTAKPPAPDASAFIGAGQKA 225

Query: 381 -------------FSGEGNRLDGKKKKLISESDSE 316
                        F G G RLDGKKK   S S S+
Sbjct: 226 GGSGGTGQNATSVFGGAGRRLDGKKKPSSSVSLSD 260


>Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical
           protein F19B6.2a protein.
          Length = 342

 Score =  111 bits (266), Expect = 7e-25
 Identities = 68/155 (43%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
 Frame = -2

Query: 741 KFESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELC 562
           + ES +LP ATF+K +P+S +FL+ITNPKAVLE  LR ++CLT  D I   Y  +  E  
Sbjct: 115 RIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFL 174

Query: 561 VLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRA 382
           V++ KP N+V IIECD+N++F PP GY EQ    R    AV      P A     +G +A
Sbjct: 175 VVDLKPANSVCIIECDVNLDFDPPEGYVEQ---PRQVTPAVTAKPPAPDASAFIGAGQKA 231

Query: 381 -------------FSGEGNRLDGKKKKLISESDSE 316
                        F G G RLDGKKK   S S S+
Sbjct: 232 GGSGGTGQNATSVFGGAGRRLDGKKKPSSSVSLSD 266


>AC025715-11|AAP13753.1|  516|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.12b protein.
          Length = 516

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 504 EFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISES 325
           E++  V +    H+  + +  V  M +     + E +G    SGE    DG   KL  + 
Sbjct: 201 EYSLDVVHAYMQHIQNTAELCVREMLKKVGRKVLEKTGKSQLSGEDFMDDGTVIKLTVDI 260

Query: 324 DSEPGTS 304
           DSE GT+
Sbjct: 261 DSEEGTA 267


>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
            protein Y38F2AR.12a protein.
          Length = 1187

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 504  EFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISES 325
            E++  V +    H+  + +  V  M +     + E +G    SGE    DG   KL  + 
Sbjct: 872  EYSLDVVHAYMQHIQNTAELCVREMLKKVGRKVLEKTGKSQLSGEDFMDDGTVIKLTVDI 931

Query: 324  DSEPGTS 304
            DSE GT+
Sbjct: 932  DSEEGTA 938


>U88311-3|AAB42345.1|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein27 protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 185 LFKHLQAKDLHCVLPSLRTKTG 120
           LF+H+   D+H  LPSL + TG
Sbjct: 175 LFRHIGEPDVHSYLPSLMSTTG 196


>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
            protein K09D9.11 protein.
          Length = 861

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
 Frame = -3

Query: 461  QGQMMEQ*KVWMKILLR*CPNLVASGRLAAKATASMERKRS*SARVIPNRELRNPASHMY 282
            +G M     V++ I+++ C NL +   LA      +           P++ L N  SH Y
Sbjct: 747  KGMMPYMHGVFLAIVMKKCKNLASLTILATSQGGFVMDS-------FPDKNLFNAKSHPY 799

Query: 281  EAFRITTL*LVH---CDLSEIQDQPKTLKRRLKPNLFKHLQAK 162
               RI  L L+H    DLS  ++ P  +        F H   K
Sbjct: 800  HHSRIGPLILIHDGTMDLSAYKNDPDEMYTLFTEEEFIHFLLK 842


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,412,301
Number of Sequences: 27780
Number of extensions: 394067
Number of successful extensions: 991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)