Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e19
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    28   0.11 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 593 IAMTSPVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSN 739
           I++T+   K  KLR     ++   V+S +   KGW+  N+  G+++  N
Sbjct: 228 ISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGNESDHN 276


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 711 TFSKFQPLSEDFLDITNPKAVLENCLRNF--SCLTTGD 604
           T   +QP  E+  + T    VLE C RN   S +T G+
Sbjct: 195 THIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGN 232


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -3

Query: 239 LSEIQDQPKTLKRRLKPNLFKHLQAKDLHCVLPSLRTKTGFLYQYIVVYVWLE 81
           +SE++   +     LKPN    +  ++   V     T+TG    ++ +  W+E
Sbjct: 466 ISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIE 518


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 243 RFIRNSRPAKDPKEEAQTE 187
           RF+   RP KD  EE + E
Sbjct: 347 RFLLIERPKKDEDEEEEEE 365


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 793 LPHWMMANLVLEEGALIQI*KCITTC 716
           +PH +  N   E+GAL+ +   + +C
Sbjct: 168 IPHDIAVNTTTEKGALVTLSVQLLSC 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,987
Number of Sequences: 438
Number of extensions: 5165
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)